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This is a read-only mirror of the GitHub R package repository.

A computational method to identify signalling perturbations targeting specific sets of transcription factors for cellular conversion

derived from the work done here https://github.com/snakemake-workflows/chipseq

PINK1 shows LRRK2, Parkin, and SNCA as part of the Parkinson’s network.

Scripts, launchers and snakefiles for analysing AMR, MGEs and transmission across mice with and without antibiotic treatment

drake / docker / gitlab-CI

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

Pre-screening mass spectrometry data.

Network Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]