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Classifier scripts to identify prokaryote and eukaryotic contigs

All-in-one pandoc-based static site builder with tags and stuff

https://r3lab.uni.lu

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides

Static site that list some projects in the biocore. Use Jekyll.

Repository for all slides related to R3 courses.

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

Scripts, launchers and snakefiles for analysing AMR, MGEs and transmission across mice with and without antibiotic treatment

Repository for TransSynW webinterface, available at transsynw.lcsb.uni.lu

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides

https://r3.pages.uni.lu/labCards

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides

Next version of PathoFact: https://git-r3lab.uni.lu/laura.denies/PathoFact

Documentation for DAISY

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.