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Want to learn how to use snakemake? Here are some example to demonstrate the main components and some advanced functionalities.

In this repository I will try to test app reviews feature of Gitlab

Pre-screening mass spectrometry data.

This repository contains the entire microbiome code based on COBREXA.jl

https://r3lab.uni.lu

Web part of Ada Discovery Analytics backed by Play Framework.

Repository for building the official website of the R3 lab.

University website.

Constraint-Based Reconstruction and EXascale Analysis

This repository contains the code for ML analyses performed in Chapter 5 of my PhD thesis "Interpretable machine learning on omics data for the study of UPDRS III prognosis". The project consists on predicting the Unified Parkinson’s Disease Rating Scale Part III (UPDRS III) motor scores (mild/severe when classification) from whole blood transcriptomics and blood plasma metabolomics using measurements from the baseline clinical visit, and temporal or dynamic features engineered from a short temporal series of 4 and 3 timepoints, respectively, from the PPMI cohort and the LuxPARK cohort, aiming at identifying molecular and higher-level functional fingerprints linked specifically to the motor symptoms in PD.

Plugin that automatically login specified user.

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides