Explore projects

Repository for scripts used in the analyses for the publication "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance"

Network Analyses - SpiecEasi The Rscripts and Snakefile herein can be used to run SpiecEasi for generating networks from taxonomic counts Dependencies snakemake >= 5.3.0 References (SpiecEasi)[https://github.com/zdk123/SpiecEasi]

The front-end component of Fractalis.

Classifier scripts to identify prokaryote and eukaryotic contigs

Method testing and analyses of Oxford Nanopore Technology (ONT) sequencing runs Data obtained by sequencing "generous donor B" across several runs Original data prepared by Rashi (post-sequencing) Initial analyses performed by CCL

Scripts, launchers and snakefiles for analysing AMR, MGEs and transmission across mice with and without antibiotic treatment

Basic practice repository for git trainings

Repository for building the official website of the R3 lab.

University website.