Explore projects

Benchmark scripts related to the COBREXA.jl publication

Practice repository advanced git training.

Basic practice repository for git trainings

This repository contains the code for ML analyses performed in Chapter 5 of my PhD thesis "Interpretable machine learning on omics data for the study of UPDRS III prognosis". The project consists on predicting the Unified Parkinson’s Disease Rating Scale Part III (UPDRS III) motor scores (mild/severe when classification) from whole blood transcriptomics and blood plasma metabolomics using measurements from the baseline clinical visit, and temporal or dynamic features engineered from a short temporal series of 4 and 3 timepoints, respectively, from the PPMI cohort and the LuxPARK cohort, aiming at identifying molecular and higher-level functional fingerprints linked specifically to the motor symptoms in PD.

Basic practice repository for git trainings

Practice repository advanced git training.

This project hosts the JSON schemas used for representing the metadata of submissions to the ELIXIR translational data repository. It also provides validation utility methods.

Practice repository R3 git training. Slides: https://r3school.pages.uni.lu/git.slides

Codes for running CNV pipeline to analyse copy number variation from WGS data.

Integrated in vitro and in silico modelling delineates the molecular effects of a synbiotic regimen on colorectal-cancer derived cells.

Utilities that work with GNPS records.

Basic practice repository for git trainings

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.

https://r3.pages.uni.lu/howto-cards