Explore projects

ShinyTPs: Curate transformation products from text mining results from HSDB & PubChem

A project for interactions with PubChem

This repository contains the code for statistical analyses performed in Chapter 3 of my thesis "Cross-sectional and longitudinal profiling of PD transcriptomics and metabolomics". The project consists on whole blood transcriptomics and blood plasma metabolomics cross-sectional and longitudinal profiling of Parkinson's disease patients and controls from the PPMI cohort and the LuxPARK cohort respectively, to identify differential molecular and higher-level functional features in PD.

Repository for all slides related to R3 courses.

Transfer learning

STAR and DESeq2

Repository for NORMAN-SLE work organization at ECI, including list tracking, updates and documentation. Main representatives: Emma and Hiba.

An automated workflow for constructing maps of molecular mechanisms for given diseases. It streamlines querying gene-disease and variant-disease associations, calculating enrichment of disease maps and pathways, and combining enriched diagrams with text mining data into a single map, meant for the MINERVA Platform.

R code for an interface to MINERVA API and helper functions