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Template repository for writing a paper the R3 way.

from https://gitlab.com/ecohealthalliance/drake-gitlab-docker-example

from https://gitlab.com/ecohealthalliance/drake-gitlab-docker-example

drake / docker / gitlab-CI

Repository for all slides related to R3 courses.

A project for interactions with PubChem

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

LAO time series analyses

Repository for all slides related to R3 courses.

Repository for scripts used in the analyses for the publication "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance"

A project for interactions with PubChem

Mouse microglia regional heterogeneity in single cell resolution

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Treating compound mixes

A project for interactions with PubChem

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.