Explore projects

GigaSOM.jl: Huge-scale, high-performance flow cytometry clustering in Julia.

Additional analyses for IMP manuscript

Integrated meta-omics pipeline

LAO time series analyses

Scripts for the analysis of metagenomic data from the first week of life.

Workflow for the COSMIC study samples. Based on IMP assemblies and automatic single sample binning, resulting bins are linked in different samples related to 1 patient (different time-points of fecal samples and samples from the mother).

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Analysis workflows for the Leptospirillum ferriphilum omics data

Integrated in vitro and in silico modelling delineates the molecular effects of a synbiotic regimen on colorectal-cancer derived cells.