Explore projects

A project for interactions with PubChem

CO-INFECTOMICS - identification of co-infections and other factors associated with COVID-19 severity in the gut microbiome

Training materials for the MINERVA Platform

R package to calculate SPLASHes from MassBank records.

A project for interactions with PubChem

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

Educational platform for ISB401 course.

Gene regulation inference of COVID-19

The COVIDminer text mining project (https://rupertoverall.net/covidminer/) reads the published literature concerning SARS-CoV-2 and COVID-19 to extract statements about (primarily molecular) interactions. Using the API associated with this project, p

16S analyses for MCI groups in NCER-PD.

Additional Supporting Information to "Occurrence and Distribution of Pharmaceuticals and their Transformation Products in Luxembourgish Surface Waters" by Singh et al.

A new shiny interface to generate transformation products (TPs) from parent compounds (pesticides, pharmaceuticals, etc.).

Repository containing workflows for IMP3 downstream analyses Related project(s): NOMIS

All scripts used for AMR and MGE analysis of the LAO dataset