Explore projects

Educational platform for ISB401 course.

Utilities that work with GNPS records.

A new shiny interface to generate transformation products (TPs) from parent compounds (pesticides, pharmaceuticals, etc.).

Additional Supporting Information to "Occurrence and Distribution of Pharmaceuticals and their Transformation Products in Luxembourgish Surface Waters" by Singh et al.

The COVIDminer text mining project (https://rupertoverall.net/covidminer/) reads the published literature concerning SARS-CoV-2 and COVID-19 to extract statements about (primarily molecular) interactions. Using the API associated with this project, p

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

The sensitivity analysis of IFN1 boolean model is investigated against over expression and knockout mutations. The simulation is performed based on the ranked sensitivity values. Attractors' analysis is also performed to support the main conclusions.

A project for interactions with PubChem

Treating compound mixes

This is a pipeline to re-assemble the LAO isolate genomes. I could be potentially modified and applied to any other genome sequencing project.

Persistence of birth mode-dependent effects on gut microbiome composition, immune system stimulation and antimicrobial resistance during the first year of life

This GitLab folder provides the scripts that were used in my Master Thesis Project. For any types of questions, please feel free to contact me.

Mouse microglia regional heterogeneity in single cell resolution

A project for interactions with PubChem

Repository for scripts used in the analyses for the publication "Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance"