diff --git a/2019/2019-08-22_IT101-DM/slides/code_versioning.md b/2019/2019-08-22_IT101-DM/slides/code_versioning.md
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+# Code versioning
+<div style="position:absolute; width:40%">
+
+**git**
+
+ * Current standard for code versioning
+ * Maintain versions of your code as it develops
+ * Local system, which does not require an online repository
+ * Repositories allow distributed development
+
+<img align="middle" height="300px" src="slides/img/Git-logo.png">
+</div>
+
+<div class="fragment" style="position:absolute; left:50%; width:40%"">
+
+**git@lcsb**
+* Recommended, supported repository
+* Allows tracking of issues
+* Ready for continous integration - code checked on commits to the repository.
+* [https://git-r3lab.uni.lu](https://git-r3lab.uni.lu)
+
+
+ **Use at LCSB**
+
+ * All analyses code should be in a repository
+ * Minimally at submission of a manuscript
+ * Better daily
+ * Even better "analyses chunkwise"
+</div>
+<aside class="notes">
+Policy! - code in central repository
+</aside>
diff --git a/2019/2019-08-22_IT101-DM/slides/data-housekeeping.md b/2019/2019-08-22_IT101-DM/slides/data-housekeeping.md
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+# Data housekeeping
+## File names
+<div style="display:flex; position:static; width:100%">
+<div class="fragment" data-fragment-index="0" style="position:static; width:30%">
+
+### General pricinples
+ * Machine readable
+ * Human readable
+ * Plays well with default ordering
+</div>
+<div class="fragment" data-fragment-index="1" style="position:absolute; left:33%; width:30%">
+
+### Separators
+ * No spaces
+ * Underscore to separate
+ * Hyphen to combine
+
+</div>
+<div class="fragment" data-fragment-index="2" style="position:absolute; left:66%; width:30%">
+
+### Date format follows **ISO 8601**<br>
+
+ 2018-12-03<br>
+ 2018-12-06_1700
+
+</div>
+</div>
+
+
+<div class="fragment" data-fragment-index="3" style="width:100%; position:static">
+<div style="position:absolute;width:40%">
+<b>Bad</b> names
+
+ ```
+ PhD-project-Jan19 alldata_final.foo
+ Finacial detailes BIocore 19/11/12.xls
+ ATACseq1Londonmapped.bam
+ ```
+</div>
+<div style="position:relative;width:40%; bottom:20%; left:50%">
+<b>Good</b> names
+
+```
+Iris-setosa_samples_1927-05-12.csv
+PI102_Mouse12_EEG_2018-11-03_1245.tsv
+Bioinfiniti_FullProposal_2018-11-15_1655.do
+```
+</div>
+</div>
+<div class="fragment" data-fragment-index="3" style="width:100%; position:static">
+From Jenny Bryan by CC-BY
+(https://speakerdeck.com/jennybc/how-to-name-files)
+</div>
+
+
+
+# Data housekeeping
+## File organization
+* Have folder organization conventions for your **group**
+ * Per Paper
+ * Per Study/Project
+ * Per Collaborator
+* Keep <b>readme files</b> for data
+ * Title
+ * Date of Creation/Receipt
+ * Instrument or software specific information
+ * People involved
+ * Relations between multiple files/folders
+
+* Orient newcomers to the group's conventions
+
+
+
+# Data housekeeping
+<div style="position:absolute">
+
+## When working
+ * Clarify and separate source and intermediate data
+ * keep data copies to a **minimum**
+ * Cleanup post-analysis
+ * Cleanup copies created for presentations or for sharing
+ * Handover data to a new responsible when leaving
+</div>
+<div style="position:relative;left:50%; width:40%">
+<img src="slides/img/cleaning-table.jpg" height="450px">
+</div>
+
+
+
+# Data housekeeping
+## End of project
+ * data should be kept as a single copy on server-side storage
+ * non-proprietary formats
+ * minimal metadata:
+ * source
+ * context of generation
+ * data structure
+ * content
+ * sensitive data (e.g. whole genome) **must** be encrypted
+ * remove all other copies from desktops and external devices
+
+
+ * If not specified otherwise, data must be kept for **10 years** following project end for reproducibility purposes
+<aside class="notes">
+Note: sometimes it is hard to find/understand dataset 10 days old
+</aside>
+
+## In doubt on data archival?
+Contact R<sup>3</sup> for support on archival of datasets using tickets:
+ * https://service.uni.lu/sp
+ * Home > Catalog > LCSB > Biocore: Application services > Request for: Support
+
+
+
+# Data housekeeping - Summary
+
+* Use institutional media for storage of **all** data
+* Research data (particularly sensitive data) should be in a single source location
+* Enable encryption for data stored on movable media
+* Clarify and separate source and intermediate data
+* Disable write access to relevant source data (read-only)
+* Backup research data!
+* Download Anti-virus software
+* Generate checksums
+
+<div class="fragment">
+
+## Server is your friend!
+
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/data-introduction.md b/2019/2019-08-22_IT101-DM/slides/data-introduction.md
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+# Data and metadata
+<div style="display:grid;grid-gap:100px;grid-template-columns: 40% 40%">
+<div >
+
+## Data
+ * "*information in digital form that can be transmitted or processed*"
+ <p align="right">-- Merriam-Webster dictionary</p>
+ * "*information in an electronic form that can be stored and processed by a computer*"
+ <p align="right">--Cambridge dictionary</p>
+
+</div>
+<div>
+
+## Metadata
+ * data describing other data
+ * information that is given to describe or help you use other information
+ * metadata are data
+ * can be processed and analyzed
+</div>
+</div>
+
+<div class="fragment">
+
+## Metadata examples:
+<div style="position:absolute">
+ <ul>
+ <li> LabBook </li>
+ <li> author/owner of the data</li>
+ <li> origin of the data
+ <li> data type
+ </ul>
+</div>
+<div style="position:absolute;left:25%">
+ <ul>
+ <li> description of content </li>
+ <li> modification date </li>
+ <li> description of modification </li>
+ <li> location </li>
+ </ul>
+</div>
+<div style="position:relative;left:50%;top:0.7em">
+ <ul>
+ <li> calibration readings</li>
+ <li> software/firmware version</li>
+ <li> data purpose</li>
+ <li> means of creation</li>
+ </ul>
+</div>
+</div>
+
+<div class="fragment">
+<br>
+</center>
+<center style="color:red">!Insufficient metadata make the data useless!</center>
+</div>
+<aside class="notes">
+Sometimes metadata collection takes more time than data collection
+</aside>
+
+
+
+# LCSB research data
+three categories:
+ * **Primary data**
+ * scientific data
+ * measurements, images, observations, notes, surveys, ...
+ * models, software codes, libraries, ...
+ * metadata directly describing the data
+ * data dictionaries
+ * format, version, coverage descriptions, ...
+
+ * **Research record**
+ * description of the research process, including experiment
+ * experiment set-up
+ * followed protocols
+ * ...
+
+ * **Project accompanying documentation**
+ * ethical approvals, information on the consent)
+ * collaboration agreements
+ * intellectual property ownership
+ * other relevant documentation
diff --git a/2019/2019-08-22_IT101-DM/slides/data_flow.md b/2019/2019-08-22_IT101-DM/slides/data_flow.md
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+# Typical flow of data
+
+<div style="display:grid;grid-gap:10px;grid-template-columns: 30% 20% 30%;
+ grid-auto-flow:column;grid-template-rows: repeat(4,auto);position:relative;left:8%">
+
+<div class="content-box fragment" data-fragment-index="1">
+ <div class="box-title red">Source data</div>
+ <div class="content">
+
+ * Experimental results
+ * Large data sets
+ * Manually collected data
+ * External
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="2">
+ <div class="box-title yellow">Intermediate</div>
+ <div class="content">
+
+ * Derived data
+ * Tidy data
+ * Curated sets
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="3">
+ <div class="box-title blue">Analyses</div>
+ <div class="content">
+
+ * Exploratory
+ * Model building
+ * Hypothesis testing
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="4">
+ <div class="box-title green">Dissemination</div>
+ <div class="content">
+
+ * Manuscript, report, presentation, ...
+
+ </div>
+</div>
+<center>
+<img src="slides/img/data-flow_sources.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_transformation.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_chart.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_paper.png" height=60%>
+</center>
+
+<div class="content-box fragment" data-fragment-index="5">
+<div class="box-title red">Preserve</div>
+ <div class="content">
+
+ * Version data sets
+ * Backup
+ * Protect
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="6">
+ <div class="box-title yellow">Reproduce</div>
+ <div class="content">
+
+ * Automate your builds
+ * Use workflow tools (e.g. Snakemake)
+
+ </div>
+</div>
+
+
+<div class="content-box fragment" data-fragment-index="7">
+<div class="box-title blue">Trace</div>
+ <div class="content">
+
+ * Multiple iterations.
+ * Code versioning (Git)
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="8">
+<div class="box-title green">Track</div>
+ <div class="content">
+
+ * Through multiple versions
+
+ </div>
+</div>
+
+</div>
+<aside class="notes">
+flow of the data is downstream (mostly), but you are going back and forth
+applies to all data (financial report, lab safety assessment)
+</aside>
diff --git a/2019/2019-08-22_IT101-DM/slides/fair-principles.md b/2019/2019-08-22_IT101-DM/slides/fair-principles.md
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+# FAIR (meta)data principles
+ * dates back to 2014
+ * well accepted by scientific community
+ * necessity in data driven science
+ * officially embraced by EU and G20
+ * required by funding agencies and journal publishers
+
+<center>
+<img src="slides/img/fair-principles.png" height="400px">
+</center>
+<br>
+<br>
diff --git a/2019/2019-08-22_IT101-DM/slides/howtos.md b/2019/2019-08-22_IT101-DM/slides/howtos.md
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+# LCSB How-Tos
+<br>
+https://howto.lcsb.uni.lu/
+<center>
+ <iframe data-src="https://howto.lcsb.uni.lu/" height="600px" width="1200px"></iframe>
+</center>
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diff --git a/2019/2019-08-22_IT101-DM/slides/img/scripts/ggplot_visualization.R b/2019/2019-08-22_IT101-DM/slides/img/scripts/ggplot_visualization.R
new file mode 100644
index 0000000000000000000000000000000000000000..aedbb7067eea83600fedf31b0f56aec558696d33
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/img/scripts/ggplot_visualization.R
@@ -0,0 +1,22 @@
+
+library(ggplot2)
+library(data.table)
+library(ggpubr)
+data(iris)
+iris <- data.table(iris)
+iris <- iris[c(1:103)]
+
+g1 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+ geom_bar(aes(fill = Species),stat="summary", fun.y="mean" ) +guides(fill = F)+
+ ylim(c(0,8))
+
+g2 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+ geom_boxplot(aes(fill = Species))+
+ ylim(c(0,8))+guides(fill = F)
+
+g3 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+ geom_boxplot(aes(fill = Species))+
+ ylim(c(0,8))+ geom_point( position="jitter")+
+ guides(fill = F)
+
+ggarrange(g1, g2, g3, nrow = 1)+ggsave(filename = "../plot-data.png", device = "png", width =12, height = 6)
diff --git a/2019/2019-08-22_IT101-DM/slides/img/wordcloud.png b/2019/2019-08-22_IT101-DM/slides/img/wordcloud.png
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diff --git a/2019/2019-08-22_IT101-DM/slides/index.md b/2019/2019-08-22_IT101-DM/slides/index.md
new file mode 100644
index 0000000000000000000000000000000000000000..27f78049a7c6b04c51174c45b44e99dbaba866ae
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/index.md
@@ -0,0 +1,20 @@
+# IT101 - Working with computers
+<br>IT101 - Working with computers<br>
+## November 7th, 2019
+
+<div style="top: 6em; left: 0%; position: absolute;">
+ <img src="theme/img/lcsb_bg.png">
+</div>
+
+<div style="top: 5em; left: 60%; position: absolute;">
+ <img src="slides/img/r3-training-logo.png" height="200px">
+ <br><br><br><br>
+ <h3></h3>
+ <br><br><br>
+ <h4>
+ Vilem Ded<br>
+ Data Steward<br>
+ vilem.ded@uni.lu<br>
+ <i>Luxembourg Centre for Systems Biomedicine</i>
+ </h4>
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/ingestion.md b/2019/2019-08-22_IT101-DM/slides/ingestion.md
new file mode 100644
index 0000000000000000000000000000000000000000..1f26bc725eeb959ee923da1d5f0a4d0686283879
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/ingestion.md
@@ -0,0 +1,68 @@
+# Data housekeeping
+## Available data storage
+<div class='fragment' style="position:absolute">
+<img src="slides/img/LCSB_storages_full.png" height="750px">
+</div>
+
+<div class='fragment' style="position:absolute">
+<img src="slides/img/LCSB_storages_personal-crossed.png" height="750px">
+</div>
+
+
+
+# Data ingestion/transfer
+## Receiving and sending data
+
+<img height="450px" style="position:relative;left:10%" src="slides/img/banned_exchange_channels.png"><br>
+<div style="position:absolute; left:10%;width:30%">
+
+## E-mail is not for data transfer
+
+* Avoid transfer of any data by e-mail
+* E-mail is a poor repository
+* Data can be read on passage
+
+</div>
+<div class="fragment" style="left:50%; width:30%; position:absolute">
+
+## Exchanging data
+* Share on Atlas server
+* OwnCloud share (LCSB - BioCore)
+* DropIt service (SIU)
+* DUMA (Aspera) share for sensitive data
+</div>
+</div>
+
+
+
+
+# Data ingestion/transfer
+Data can be corrupted:
+ * (non-)malicious modification
+ * faulty file transfer
+ * disk corruption
+
+<div class="fragment">
+
+### Solution
+
+ * disable write access to the source data
+ * Generate checksums!
+
+<div style="position:absolute;left:40%">
+<img src="slides/img/checksum.png" width="500px">
+</div>
+</div>
+
+<div class="fragment" style="position:relative; left:0%">
+
+
+## When to generate checksums?
+* before data transfer
+ - new dataset from collaborator
+ - upload to remote repository
+
+* long term storage
+ - master version of dataset
+ - snapshot of data for publication
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/introduction.md b/2019/2019-08-22_IT101-DM/slides/introduction.md
new file mode 100644
index 0000000000000000000000000000000000000000..95e30815a03c5be0f1dd409701ec0edc15d2aa73
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/introduction.md
@@ -0,0 +1,26 @@
+# Introduction
+<div class="fragment" style="position:absolute">
+<img height="450px" src="slides/img/wordcloud.png"><br>
+
+## Learning objectives
+
+ * How to manage your data
+ * How to look and analyze your data
+ * Solving issues with computers
+ * Reproduciblity in the research data life cycle
+
+</div>
+<div class="fragment" style="position:relative;left:50%; width:40%">
+<div >
+<center>
+<img height="405px" src="slides/img/rudi_balling.jpg"><br>
+Prof. Dr. Rudi Balling, director
+</center>
+</div>
+
+## Pertains to practically all people at LCSB
+ * Scientists
+ * PhD candidates
+ * Technicians
+ * Administrators
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/list.json b/2019/2019-08-22_IT101-DM/slides/list.json
new file mode 100644
index 0000000000000000000000000000000000000000..5fb59556a24028c74cb6a46ec65a0603e05c050a
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/list.json
@@ -0,0 +1,17 @@
+[
+ {"filename": "index.md"},
+ {"filename": "introduction.md"},
+ {"filename": "data-introduction.md"},
+ {"filename": "data_flow.md"},
+ {"filename": "ingestion.md"},
+ {"filename": "storage_setup.md"},
+ {"filename": "data-housekeeping.md"},
+ {"filename": "reproducibility.md"},
+ {"filename": "code_versioning.md"},
+ {"filename": "visualization.md"},
+ {"filename": "problem_solving.md"},
+ {"filename": "fair-principles.md"},
+ {"filename": "r3_group.md"},
+ {"filename": "howtos.md"},
+ {"filename": "thanks.md"}
+]
diff --git a/2019/2019-08-22_IT101-DM/slides/overview.md b/2019/2019-08-22_IT101-DM/slides/overview.md
new file mode 100644
index 0000000000000000000000000000000000000000..6f9143c7c64fa539eb44c3ea5ff9eec076701879
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/overview.md
@@ -0,0 +1,25 @@
+## Overview
+
+0. Introduction - learning objectives + targeted audience
+1. Data workflow
+1. Ingestion:
+ * receiving/sending/sharing data
+ * file naming
+ * checksums
+ * backup
+ 1. making data tidy
+ * what is table
+ *
+ 1. Learning to code workflows and analyses - excel files, coding
+ 1. Code versioning and reproducibility
+ 1. Visualization
+ * see the data
+ 1. problem solving
+ * guide
+ * rubberducking
+ * google for help
+ * oracle
+ 1. R3 team
+ 1. Acknowledgment
+
+ 1. data minimization
diff --git a/2019/2019-08-22_IT101-DM/slides/problem_solving.md b/2019/2019-08-22_IT101-DM/slides/problem_solving.md
new file mode 100644
index 0000000000000000000000000000000000000000..6f0770d7434823839ea2081e2f2439f58c73535e
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/problem_solving.md
@@ -0,0 +1,24 @@
+# Problem solving
+A guide for solving computing issues
+
+1. Express the problem
+ * Write down what you want to achieve
+2. Search for help
+ * Read **FAQs**, **help pages** and the **official documentation** well before turning to Google
+ * Use stack exchange, forums and related resources carefully
+3. Ask an expert
+
+
+
+# Problem solving
+## Write to the Oracle
+
+ * The Oracle gives the precise answer to your problems
+ * You have to submit the problem in writing
+ * The Oracle answers a questions only once or if it finds the problem interesting
+ * If you supply a trivial problem, it will stop answering
+
+ * Available Oracles
+ * Service Now @ [service.uni.lu] (Uni and LCSB helpdesk)
+ * [Stack Overflow](https://stackoverflow.com/) and other online sites
+ * Local experts
diff --git a/2019/2019-08-22_IT101-DM/slides/r3_group.md b/2019/2019-08-22_IT101-DM/slides/r3_group.md
new file mode 100644
index 0000000000000000000000000000000000000000..63cf7cdfe3e62e3e33ebbafc79f7805dcb1e21ee
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/r3_group.md
@@ -0,0 +1,132 @@
+# Responsible and Reproducible Research (R<sup>3</sup>)
+## What is R<sup>3</sup>?
+
+
+A multi-facetted change management
+process built on 3 pillars:
+
+- R3 pathfinder
+
+- R3 school
+
+- R3 accelerator
+
+Common link module: R3 clinic
+
+<div style="top: -1em; left: 50%; position: absolute;">
+ <img src="slides/img/3pillars-full.png">
+</div>
+
+<br>
+<br>
+<br>
+<br>
+
+<aside class="notes">
+Pathfinder - policies, data management changes,
+School - courses, howtos,
+Accelerator - advanced teams and their boost/support
+Clinic - hands-on, meetings in groups, code review + suggestions
+</aside>
+
+## R<sup>3</sup> Training
+ * LCSB's Monthly Data Management and Data Protection training
+ * ELIXIR Luxembourg's Research data management and stewardship training - 27th Jan 2020
+ * R<sup>3</sup> school Git basics - every 4 months
+ <aside class="notes">
+ Direct newcommers to this monthly training
+ </aside>
+
+
+
+# Responsible and Reproducible Research (R<sup>3</sup>)
+<center><img src="slides/img/r3-training-logo.png" height="200px"></center>
+
+Your R<sup>3</sup> contacts:
+<div style="display:block;text-align:center;position:relative">
+<div class="profile-container">
+
+ * Christophe Trefois
+ * <img src="slides/img/R3_profile_pictures/christophe_trefois.png">
+ * R<sup>3</sup> coordination
+
+</div>
+<div class="profile-container">
+
+ * Venkata Satagopam
+ * <img src="slides/img/R3_profile_pictures/venkata_satagopam.png">
+ * R<sup>3</sup> Core
+
+</div>
+<div class="profile-container">
+
+ * Reinhard Schneider
+ * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png">
+ * Head of Bioinformatics Core
+
+</div>
+<div class="profile-container">
+
+ * Pinar Alper
+ * <img src="slides/img/R3_profile_pictures/pinar_alper.png">
+ * Data steward
+
+</div>
+<div class="profile-container">
+
+ * Yohan Yarosz</li>
+ * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png">
+ * R<sup>3</sup> Core
+
+</div>
+<div class="profile-container">
+
+ * Laurent Heirendt</li>
+ * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png">
+ * Git, CI
+
+</div>
+<div class="profile-container">
+
+ * Wei Gu</li>
+ * <img src="slides/img/R3_profile_pictures/wei_gu.png">
+ * R<sup>3</sup> Core
+
+</div>
+<div class="profile-container">
+
+ * Sarah Peter</li>
+ * <img src="slides/img/R3_profile_pictures/sarah_peter.png">
+ * HPC
+
+</div>
+<div class="profile-container">
+
+ * Vilem Ded</li>
+ * <img src="slides/img/R3_profile_pictures/vilem_ded.png">
+ * Data steward
+
+</div>
+<div class="profile-container">
+
+ * Noua Toukourou</li>
+ * <img src="slides/img/R3_profile_pictures/noua_toukourou.png">
+ * R<sup>3</sup> Core
+
+</div>
+<div class="profile-container">
+
+ * Alexey Kolodkin</li>
+ * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png">
+ * Data steward
+
+</div>
+<div class="profile-container">
+
+ * Maharshi Vyas</li>
+ * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png">
+ * R<sup>3</sup> Core
+
+</div>
+
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/reproducibility.md b/2019/2019-08-22_IT101-DM/slides/reproducibility.md
new file mode 100644
index 0000000000000000000000000000000000000000..746ff14558c0470166ee3655e900da8993396c45
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/reproducibility.md
@@ -0,0 +1,94 @@
+# Reproducibility
+* ensures credibility
+* key requirement for follow-up and collaborative studies
+
+<div style="position:absolute">
+<img src="slides/img/reproducibility_nature.png" height="650px">
+</div>
+
+<div class="fragment" style="position:relative;left:50%">
+
+## Why is our workflow not reproducible?
+
+ Lack of provenance:
+ * Input data downloaded from “some websiteâ€
+ * Copy & paste operations
+ * Manual text entry
+ * Analysis not coded
+ * Intermediate and final data not generated by deterministic processes
+</div>
+
+
+
+# Reproducibility
+## Learning to code workflows and analyses
+<div style="display:inline-grid;grid-gap: 40px;grid-template-columns: auto auto;position:relative;left:12%">
+<div class="fragment">
+<div class="content-box">
+<div class="box-title red">Excel alone</div>
+<div class="content">
+
+ * Is great for looking at data.
+ * Data entry is fast.
+ * Analysis flow is hidden and not in focus.
+
+</div>
+</div>
+<img src="slides/img/excel_data-sheet.png" height="350px">
+</div>
+
+<div class="fragment">
+<div class="content-box">
+<div class="box-title">Coding</div>
+<div class="content">
+
+ * Is great for controlling analysis
+ * Data is hidden.
+ * Flow is visible.
+</div>
+</div>
+<img src="slides/img/code-example.png" height="350px">
+</div>
+</div>
+
+<div class="content-box fragment" style="width:70%;margin:0 auto;">
+<div class="box-title green">Develop data science skills</div>
+<div class="content">
+
+ * Develop good data management and analysis habits.
+ * Start coding your analysis within Excel.
+ * Make yourself familiar with a statistics environment such as R, Python or Matlab
+ * No need to learn a high level programming language such as C++ or Java.
+
+</div>
+</div>
+
+</div>
+
+
+
+# Table
+<div style="position:absolute">
+"Tabular format of data"
+
+### Header
+
+ * one line!
+ * **good** names of columns
+
+### Rows
+ * represent observations/entities
+
+### Columns
+ * represent property of the observations
+ * one data type
+</div>
+<div style="left:50%; position:relative; top:-2em">
+<img src="slides/img/excel_data-sheet.png" width="600px">
+<div class="fragment" data-fragment-index="3" style="position:absolute">
+<img src="slides/img/excel_analyses-sheet.jpeg" width="600px"><br>
+</div>
+<div class="fragment" data-fragment-index="4" style="position:relative">
+<img src="slides/img/red-cross.png" width="600px"><br>
+</div>
+</div>
diff --git a/2019/2019-08-22_IT101-DM/slides/storage_setup.md b/2019/2019-08-22_IT101-DM/slides/storage_setup.md
new file mode 100644
index 0000000000000000000000000000000000000000..d05cd48bf85660315a878b7159dcdc269ca26570
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/storage_setup.md
@@ -0,0 +1,73 @@
+# Storage set-up
+
+* Download Anti-virus software
+* Encrypt movable media
+
+### Backup
+ * take care of your own backups!
+ * don't work on your backup copy!
+ * minimum is <b>3-2-1 backup rule</b>
+
+<div class="fragment" style="display:inline-grid;grid-template-columns: repeat(3, 1fr);">
+<div class="content-box">
+ <div class="box-title green">Personal research data</div>
+ <div class="content">
+
+ * Working documents on your laptop
+ * Online share (DropIt, OwnCloud)
+ * Copy on an external hard drive
+
+ </div>
+</div>
+
+<div class="content-box">
+ <div class="box-title blue">Group research data</div>
+ <div class="content">
+
+ * Research data generated in group
+ * Back-up by central IT
+ * Geo-resilient copy
+
+ </div>
+</div>
+</div>
+
+
+
+# Storage set-up
+## Backup - Central IT/LCSB
+<div style="position:relative">
+<img src="slides/img/LCSB_storages_backed-up.png" height="750px">
+</div>
+<div style="position:absolute;left:65%;top:60%">
+
+Server administrators take care of:
+* server backups
+* LCSB OwnCloud backups
+* group/application server backups (not always)
+
+</div>
+
+
+
+# Storage set-up
+## Backup - personal research data
+<div style="position:relative">
+<img src="slides/img/LCSB_storages_backup.png" height="750px">
+</div>
+<div style="position:absolute;left:55%;top:70%">
+
+<font color="red">One version should reside on Atlas!</font>
+
+</div>
+
+
+
+# The Server is your friend!
+ * Allows a consistent backup policy for your datasets
+ * Keeps number of copies to minimum
+ * Specification of clear access rights
+ * High accessibility
+ * Data are discoverable
+ * Server can't be stolen
+ * ...
diff --git a/2019/2019-08-22_IT101-DM/slides/thanks.md b/2019/2019-08-22_IT101-DM/slides/thanks.md
new file mode 100644
index 0000000000000000000000000000000000000000..12e1b47e2f9440873ae0a7dd2f35f285f0307877
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/thanks.md
@@ -0,0 +1,11 @@
+# Thank you.<sup> </sup>
+<center><img src="slides/img/r3-training-logo.png" height="200px"></center>
+<br>
+<br>
+<br>
+<br>
+<center>
+Contact us if you need help:
+
+<a href="mailto:r3lab.core@uni.lu">r3lab.core@uni.lu</a>
+</center>
diff --git a/2019/2019-08-22_IT101-DM/slides/visualization.md b/2019/2019-08-22_IT101-DM/slides/visualization.md
new file mode 100644
index 0000000000000000000000000000000000000000..78847e73a297f77e3753623d7e546dcf499d4e2f
--- /dev/null
+++ b/2019/2019-08-22_IT101-DM/slides/visualization.md
@@ -0,0 +1,21 @@
+# Visualization
+<center>
+
+**Plot your data!**
+<figure>
+ <img src="slides/img/DinoSequentialSmaller.gif" height="500px">
+ <blockquote>"never trust summary statistics alone; always visualize your data"</blockquote>
+ <figcaption>--Alberto Cairo</figcaption>
+</figure>
+</center>
+
+
+
+# Visualization
+<center>
+
+**Plot your data!**
+<figure>
+ <img src="slides/img/plot-data.png" height="800px">
+</figure>
+</center>
diff --git a/README.md b/README.md
index a64436f75fdcd9991cba69e793914ca389c038eb..504603b2a4ce3a90fe48358862f2404f4636ddbc 100644
--- a/README.md
+++ b/README.md
@@ -2,68 +2,4 @@
This repository contains all presentations related to R3.
-## Prerequisites
-
-In order to use the slide deck, you must have:
-
-- **git**: For convenience, have your SSH key configured on git-r3lab. [Here](https://docs.gitlab.com/ee/gitlab-basics/create-your-ssh-keys.html) is how to do it.
-- **git-lfs**: Installation instructions are [here](https://help.github.com/en/articles/installing-git-large-file-storage)
-- **Python 3**: It is recommend to use a virtual environment. Information on how to create a virtual environment is [here](https://virtualenvwrapper.readthedocs.io/en/latest/).
-- **yarn**: Instructions are [here](https://yarnpkg.com/lang/en/docs/install)
-
-## How to get started
-
-- Fork this repository
-- Clone your fork
- ```bash
- $ git clone --recurse-submodules ssh://git@git-r3lab-server.uni.lu:8022/<yourUsername>/presentations-internal.git
- ```
-- If the `--recurse-submodules` flag has been omitted, run this command to check for the missing modules and update them:
- ```bash
- $ git submodule update --init --recursive
- ```
-- Open a terminal and work on your presentation:
- ```bash
- $ cd presentations-internal
- $ pip install .
- $ contribute --date="YYYY-MM-DD" --name="yourAwesomeTitle"
- ```
-
-## <img src="https://webdav-r3lab.uni.lu/public/R3lab/logos/warning.png" height="20px" width="20px"> Tips
-
-- Please create a branch from `develop` before starting to work on your presentation. You could name it `YYYY-MM-DD_yourAwesomeTitle`.
-- If you are done with making changes to your presentation, push them to your fork and open a merge request against the `develop` branch.
-
-## <img src="https://webdav-r3lab.uni.lu/public/R3lab/logos/warning.png" height="20px" width="20px">Solving the error: `Fatal error: Unable to find local grunt.`
-
-If you get a fatal error complaining about your local grunt installation, please make sure that you have add the `--recurse-submodules` flag when cloning, or that you ran the `git submodule update --init --recursive` command from within
-the `presentations-internal` directory.
-
-Please also make sure that you run the `contribute` command from the root of the `presentations-internal` directory.
-
-
-## How to continue working on a presentation
-
- For resuming your work on a presentation, you can either run the same contribute command:</br>
- ```
- $ contribute --date="YYYY-MM-DD" --name="yourAwesomeTitle"
- ```
-
- or you can navigate to your presentation directory and start `grunt` server:
- ```
- $ cd YYYY/yourAwesomeTitle/
- $ grunt server
- ```
-
-## Adding a new slide/slides
-
- Create a Markdown file with your slide(s) in `YYYY-MM-DD_yourAwesomeTitle/slides` and place it into `list.md` file at desired position:
-
-```
-[
- { "filename": "index.md" },
- { "filename": "structure.md" },
- { "filename": "myNewAwesomeSlide.md" },
- { "filename": "thanks.md" }
-]
-```
+Detailed instructions are here: https://git-r3lab.uni.lu/R3/outreach/templates/presentation
\ No newline at end of file
diff --git a/contribute.py b/contribute.py
index a8c76e102786d7e3bc83865a7fc45b52a963b6a4..ea625ac904b127a1f0fc68bfb19110657e34a89e 100644
--- a/contribute.py
+++ b/contribute.py
@@ -20,6 +20,10 @@ def main(date, name):
# get the root directory
rootDir = os.getcwd()
+ # create a root directory if not existing
+ if not os.path.exists(mainDir):
+ os.mkdir(mainDir)
+
# generate the full name of the presentation
fullName = date + "_" + name
diff --git a/contribute.sh b/contribute.sh
new file mode 100755
index 0000000000000000000000000000000000000000..76ceb98890c5e78b1098cce8f372235af6300b30
--- /dev/null
+++ b/contribute.sh
@@ -0,0 +1,35 @@
+#!/bin/bash
+
+# set the variables
+dockerImg="git-r3lab.uni.lu:4567/r3/docker/nodejs-yarn-grunt"
+dockerPort="9000"
+
+helpFunction()
+{
+ echo ""
+ echo "Usage: $0 -d parameterDate -n parameterName"
+ echo -e "\t-d Data of presentation"
+ echo -e "\t-n Name of presentation"
+ exit 1 # Exit script after printing help
+}
+
+while getopts "d:n:" opt
+do
+ case "$opt" in
+ d ) parameterDate="$OPTARG" ;;
+ n ) parameterName="$OPTARG" ;;
+ ? ) helpFunction ;; # Print helpFunction in case parameter is non-existent
+ esac
+done
+
+# Print helpFunction in case parameters are empty
+if [ -z "$parameterDate" ] || [ -z "$parameterName" ]
+then
+ echo "Some or all of the parameters are empty";
+ helpFunction
+fi
+
+# launch the docker file
+cmd="python contribute.py --date=\"$parameterDate\" --name=\"$parameterName\""
+
+docker run -p $dockerPort:$dockerPort -it -v $(pwd)/:/presentation $dockerImg /bin/bash -c "$cmd"
diff --git a/template/Gruntfile.coffee b/template/Gruntfile.coffee
index 4aee8a284d585fe7a2863c7c896007966ef05b5b..686dd9be931ab71b7ae4e04acd8fba52863aad40 100644
--- a/template/Gruntfile.coffee
+++ b/template/Gruntfile.coffee
@@ -36,9 +36,9 @@ module.exports = (grunt) ->
port: 9000
# Change hostname to '0.0.0.0' to access
# the server from outside.
- hostname: 'localhost'
+ #hostname: '0.0.0.0'
base: '.'
- open: true
+ #open: true
livereload: true
jshint:
diff --git a/theme b/theme
index 3f950f06b72824f97b486a47d54754eeed0f0faf..8b3401b863d08b5a676bfa327dba915a14d41e70 160000
--- a/theme
+++ b/theme
@@ -1 +1 @@
-Subproject commit 3f950f06b72824f97b486a47d54754eeed0f0faf
+Subproject commit 8b3401b863d08b5a676bfa327dba915a14d41e70