diff --git a/2021/2021-07-27_IT101-DM/slides/access_management.md b/2021/2021-07-27_IT101-DM/slides/access_management.md deleted file mode 100644 index 14cff81ab4fd0cf697050da35347ab2d42c6ef48..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/access_management.md +++ /dev/null @@ -1,36 +0,0 @@ -# Access Management -<div style="display:grid;grid-gap:100px;grid-template-columns: 40% 40%"> -<div > - -## UNI-LU Account - * Mails services including web mail: <a href="https://owa.uni.lu" style="color:blue; font-size:0.8em;">owa.uni.lu</a> - * Microsoft Office & Teams: <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a> - * SAP services: <a href="https://fiori.uni.lu/fiori" style="color:blue; font-size:0.8em;">fiori.uni.lu/fiori</a> - * University's Intranet: <a href="https://intranet.uni.lux" style="color:blue; font-size:0.8em;">intranet.uni.lux</a> - * All remote work services : Webex, Slack... - - -</div> -<div> -<div class="fragment"> - -## LUMS Account - * go to <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>: make a request and go to <a href="https://lcsb-cdc-lums-02.uni.lu" style="color:blue; font-size:0.8em;">lums.uni.lu</a> to activate your account upon receiving credentials - - <div style="position:absolute;left:20%;top:90%"> - <img src="slides/img/access.png" height="400px"> - </div> - - <div style="position:absolute;left:60%;top:90%"> - <img src="slides/img/lums.png" height="400px"> - </div> -<div class="fragment"> - - * Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a> - * R3 Gitlab: <a href="https://gitlab.lcsb.uni.lu" style="color:blue; font-size:0.8em;">gitlab.lcsb.uni.lu</a> - * Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> - * LCSB Wiki page, Webdav, LCSB Analytics page - - -</div> -</div> diff --git a/2021/2021-07-27_IT101-DM/slides/code_versioning.md b/2021/2021-07-27_IT101-DM/slides/code_versioning.md deleted file mode 120000 index b5c7e06fec7c70db4c46438f42df5aada0c4e3b6..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/code_versioning.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/code_versioning.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/data-housekeeping.md b/2021/2021-07-27_IT101-DM/slides/data-housekeeping.md deleted file mode 120000 index 6146c0087b6fb77fe25b41811ba800db5a2f6f45..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/data-housekeeping.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/data-housekeeping.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/data-introduction.md b/2021/2021-07-27_IT101-DM/slides/data-introduction.md deleted file mode 120000 index a38b5e87a9dad6508aabfeb86be6ee262cfe2dfc..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/data-introduction.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/data-introduction.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/data_flow.md b/2021/2021-07-27_IT101-DM/slides/data_flow.md deleted file mode 120000 index b7a2b3166efee639efba7cbf54e7f69b9d69f53f..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/data_flow.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/data_flow.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/data_life_cycle.md b/2021/2021-07-27_IT101-DM/slides/data_life_cycle.md deleted file mode 100644 index 1b538d2e29fe326527e7b41394ff0258b0df2ce0..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/data_life_cycle.md +++ /dev/null @@ -1,23 +0,0 @@ - -# Some practical recommandations - -* Do your data processing according to the data life cycle steps - -<div class='fragment' style="position:relative;left:25%;top:60%"> -<img align="middle" height="300px" src="slides/img/rdm-cycle.png"> -</div> -<div class="fragment"> - -* Use data management planning tools: - * DMPonline <a href="https://dmponline.elixir-luxembourg.org/" style="color:blue; font-size:0.8em;">https://dmponline.elixir-luxembourg.org/</a> - <img src="slides/img/dmponline_logo.png" height="50px"> - * DS Wizard <a href="https://learning.ds-wizard.org/" style="color:blue; font-size:0.8em;">https://learning.ds-wizard.org/</a> - <img src="slides/img/dsw_logo.png" height="100px"> - -<div> - -<div class="fragment"> - -* Annotate your data and code using Ontologies and standardised metadata - -</div> \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/fair-principles.md b/2021/2021-07-27_IT101-DM/slides/fair-principles.md deleted file mode 120000 index cb5bc476d4cec8f2137074d0b3f71da0653d415a..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/fair-principles.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/fair-principles.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/howtos.md b/2021/2021-07-27_IT101-DM/slides/howtos.md deleted file mode 120000 index 4ff818a5d3cb5e82adddc255ff18c2cf4fc89ae5..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/howtos.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/howtos.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/img b/2021/2021-07-27_IT101-DM/slides/img deleted file mode 120000 index ad68bb48c4730adc2a31dfcacfca1ae5bebc8311..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/img +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/img \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/index.md b/2021/2021-07-27_IT101-DM/slides/index.md deleted file mode 100644 index 6ac2ae378a2a442174b519beb7bd186a70419b24..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/index.md +++ /dev/null @@ -1,20 +0,0 @@ -# IT101 - Working with computers -<br>IT101 - Working with computers<br> -## July 27th, 2021 - -<div style="top: 6em; left: 0%; position: absolute;"> - <img src="theme/img/lcsb_bg.png"> -</div> - -<div style="top: 5em; left: 60%; position: absolute;"> - <img src="slides/img/r3-training-logo.png" height="200px"> - <br><br><br><br> - <h3></h3> - <br><br><br> - <h4> - Nene Barry<br> - Data Steward<br> - nene.barry@uni.lu<br> - <i>Luxembourg Centre for Systems Biomedicine</i> - </h4> -</div> diff --git a/2021/2021-07-27_IT101-DM/slides/ingestion.md b/2021/2021-07-27_IT101-DM/slides/ingestion.md deleted file mode 120000 index 57dfd695c79678991180d8e7cbd8a899098989ec..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/ingestion.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/ingestion.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/introduction.md b/2021/2021-07-27_IT101-DM/slides/introduction.md deleted file mode 120000 index f4837a3cd8c480b8e28ff81a28ba9d69228b8524..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/introduction.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/introduction.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/list.json b/2021/2021-07-27_IT101-DM/slides/list.json deleted file mode 120000 index df07566dc8dc33d5b4f759a23c0abbac0d2ea3f8..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/list.json +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/list.json \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/overview.md b/2021/2021-07-27_IT101-DM/slides/overview.md deleted file mode 120000 index 50f8000fb02fa74861ecd6e1f32132f206276317..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/overview.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/overview.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/problem_solving.md b/2021/2021-07-27_IT101-DM/slides/problem_solving.md deleted file mode 100644 index f34e0a2bc914e35010f492936be5a9506c8ecf27..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/problem_solving.md +++ /dev/null @@ -1,11 +0,0 @@ -# Problem solving -A guide for solving computing issues - -1. Express the problem - * Write down what you want to achieve -2. Search for help - * Read **FAQs**, **help pages** and the **official documentation** well before turning to Google - * Use stack exchange, forums and related resources (carefully) -3. Ask an expert - * Submit the problem in writing - * Make the question interesting diff --git a/2021/2021-07-27_IT101-DM/slides/r3_group.md b/2021/2021-07-27_IT101-DM/slides/r3_group.md deleted file mode 100644 index 723e779d6d42bf3a7bfd8d1203d712b8d58e3f58..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/r3_group.md +++ /dev/null @@ -1,140 +0,0 @@ -# Responsible and Reproducible Research (R<sup>3</sup>) -## What is R<sup>3</sup>? - - -A multi-facetted change management -process built on 3 pillars: - -- R3 pathfinder - -- R3 school - -- R3 accelerator - -Common link module: R3 clinic - -<div style="top: -1em; left: 50%; position: absolute;"> - <img src="slides/img/3pillars-full.png"> -</div> - -<br> -<br> - -<aside class="notes"> -Pathfinder - policies, finding optimal data management changes<br> -School - courses, howtos, trainnings<br> -Accelerator - advanced teams and their boost/support, CI/CD setup<br> -Clinic - hands-on, meetings in groups, code review + suggestions<br> -</aside> - -## R<sup>3</sup> Training - * LCSB's Monthly Data Management and Data Protection training - * ELIXIR Luxembourg's trainings <br> - https://elixir-luxembourg.org/training - * First steps with R (2021-07-27) - * Statistical tests and statistical learning for omics data (2021-09-14) - * R<sup>3</sup> school Git basics - every 4 months - <aside class="notes"> - Direct newcommers to this monthly training - </aside> - - - -# Responsible and Reproducible Research (R<sup>3</sup>) -<section data-transition="none" data-background-image="slides/img/r3-training-logo.png" data-background-size="1000px" data-background-opacity="0.1"> -</section> -<div style="display:block;text-align:center;position:relative;" > -<div class="profile-container"> - - * Reinhard Schneider - * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png"> - * Head of Bioinformatics Core - -</div> -<div class="profile-container"> - - * Pinar Alper - * <img src="slides/img/R3_profile_pictures/pinar_alper.png"> - * Datasteward - -</div> -<div class="profile-container"> - - * Yohan Yarosz</li> - * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png"> - * Development - -</div> -<div class="profile-container"> - - * Laurent Heirendt</li> - * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png"> - * Git, CI - -</div> -<div class="profile-container"> - - * Sarah Peter</li> - * <img src="slides/img/R3_profile_pictures/sarah_peter.png"> - * Infrastructure - -</div> -<div class="profile-container"> - - * Valentin Grouès</li> - * <img src="slides/img/R3_profile_pictures/valentine_groues.png"> - * Development - -</div> -<div class="profile-container"> - - * Vilem Ded</li> - * <img src="slides/img/R3_profile_pictures/vilem_ded.png"> - * Datasteward - -</div> -<div class="profile-container"> - - * Noua Toukourou</li> - * <img src="slides/img/R3_profile_pictures/noua_toukourou.png"> - * Infrastructure - -</div> -<div class="profile-container"> - - * Alexey Kolodkin</li> - * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png"> - * Datasteward - -</div> -<div class="profile-container"> - - * Maharshi Vyas</li> - * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png"> - * Infrastructure - -</div> - -<div class="profile-container"> - - * Nene Barry</li> - * <img src="slides/img/R3_profile_pictures/nene_barry.png"> - * Datasteward - -</div> - -<div class="profile-container"> - - * Karim Chaouch</li> - * <img src="slides/img/R3_profile_pictures/karim_chaouch.png"> - * Development - -</div> -<div class="profile-container"> - - * Christophe Trefois - * <img src="slides/img/R3_profile_pictures/christophe_trefois.png"> - * R<sup>3</sup> team lead - -</div> -</div> diff --git a/2021/2021-07-27_IT101-DM/slides/reproducibility.md b/2021/2021-07-27_IT101-DM/slides/reproducibility.md deleted file mode 120000 index 8f6e4d1f386bc7a0ca5a6939191cc7a5b7b50f89..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/reproducibility.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/reproducibility.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/storage_setup.md b/2021/2021-07-27_IT101-DM/slides/storage_setup.md deleted file mode 120000 index 9fe2d27f633b272789cb2dd57b3d963895e2643d..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/storage_setup.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/storage_setup.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/thanks.md b/2021/2021-07-27_IT101-DM/slides/thanks.md deleted file mode 120000 index 85dc36b89cdbfa538b1619e7b429499db2196fac..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/thanks.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/thanks.md \ No newline at end of file diff --git a/2021/2021-07-27_IT101-DM/slides/visualization.md b/2021/2021-07-27_IT101-DM/slides/visualization.md deleted file mode 120000 index d946af686d2d755178f317b134b6f102f7d52e0a..0000000000000000000000000000000000000000 --- a/2021/2021-07-27_IT101-DM/slides/visualization.md +++ /dev/null @@ -1 +0,0 @@ -../../2021-04-20_IT101-DM/slides/visualization.md \ No newline at end of file