diff --git a/2021/2021-04-20_IT101-DM/slides/data-housekeeping.md b/2021/2021-04-20_IT101-DM/slides/data-housekeeping.md index 8cb4d014ea2b7732e1aa2b6913379a74021cf527..ab2cca61ce38875fd70e9cd34ee325d0c4160b7a 100644 --- a/2021/2021-04-20_IT101-DM/slides/data-housekeeping.md +++ b/2021/2021-04-20_IT101-DM/slides/data-housekeeping.md @@ -73,6 +73,13 @@ From Jenny Bryan by CC-BY * Separate files you are actively working from the old ones * Orient newcomers to the group's conventions +<div style="position:absolute;left:43%;top:10%"> +<img src="slides/img/folder_structure.png" height="700px"> +</div> +<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right"> +<a href="https://riojournal.com/article/56508/" style="color:grey; font-size:0.8em;">Foundational Practices of Research Data Management</a> +</div> + # Data housekeeping diff --git a/2021/2021-04-20_IT101-DM/slides/ingestion.md b/2021/2021-04-20_IT101-DM/slides/ingestion.md index 7d168db8c9e03e261196b436ccae1b460f49fc4e..8e377655a556d2575809edaa63de35fe63d948ee 100644 --- a/2021/2021-04-20_IT101-DM/slides/ingestion.md +++ b/2021/2021-04-20_IT101-DM/slides/ingestion.md @@ -4,50 +4,34 @@ <img src="slides/img/LCSB_storages_full.png" height="750px"> </div> -<div class='fragment' style="position:absolute"> +<div class='fragment' style="position:relative"> <img src="slides/img/LCSB_storages_personal-crossed.png" height="750px"> -</div> - -<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right"> -<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a> -</div> - - - -# Data ingestion/transfer -## Receiving and sending data -<img height="400px" style="position:relative;left:10%" src="slides/img/banned_exchange_channels.png"><br> -<div style="position:absolute; left:10%;width:30%"> +<div style="position:absolute;left:65%;top:60%"> -## E-mail is not for data transfer - -* Avoid transfer of any data by e-mail -* E-mail is a poor repository -* Data can be read on passage +* Unless consortium/project has formally agreed to use a secure commercial cloud </div> -<div class="fragment" style="left:50%; width:30%; position:absolute"> -## Exchanging data -* Share on Atlas server -* OwnCloud share (LCSB - BioCore) -* DropIt service (SIU) -* LFT (IBM Aspera) share for sensitive data -</div> </div> <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right"> -<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-05" style="color:grey; font-size:0.8em;">Research Human Data Sharing Policy</a> +<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a> </div> -# Data ingestion/transfer + +# Data ingestion: Transfer and Integrity + * When sending data: <font color="red">Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!</font> + +<div class="fragment"> Data can be corrupted: + * (non-)malicious modification * faulty file transfer * disk corruption +</div> <div class="fragment"> @@ -55,8 +39,8 @@ Data can be corrupted: * disable write access to the source data * generate checksums! - -<div style="position:absolute;left:40%"> + +<div style="position:absolute;left:40%;top:30%"> <img src="slides/img/checksum.png" width="500px"> </div> </div> @@ -77,3 +61,33 @@ Data can be corrupted: <div style="position:absolute; width:45%; left:50%; top:28em; text-align:right"> <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a> </div> + + + +# Data ingestion/Integrity +## Encryption +<div class='fragment' style="position:relative;left:25%;top:60%"> +<img align="middle" height="300px" src="slides/img/encryption.png"> +</div> +<div class='fragment'> + +* Sensitive data protected by encryption +</div> +<div class='fragment'> + +* Guaranted confidentiality +</div> +<div class='fragment'> + +* Encryption key which need to be kept safe +</div> +<div class='fragment'> + +* <font color= red>Loosing your encryption key means loosing your data!</font> +</div> +<div class='fragment'> + +* Make a off-site backup of your data +</div> + + diff --git a/2021/2021-04-20_IT101-DM/slides/introduction.md b/2021/2021-04-20_IT101-DM/slides/introduction.md index 95e30815a03c5be0f1dd409701ec0edc15d2aa73..fed0b0971b7d1f868f2fd8213461c724834da16a 100644 --- a/2021/2021-04-20_IT101-DM/slides/introduction.md +++ b/2021/2021-04-20_IT101-DM/slides/introduction.md @@ -24,3 +24,5 @@ Prof. Dr. Rudi Balling, director * Technicians * Administrators </div> + + diff --git a/2021/2021-04-20_IT101-DM/slides/list.json b/2021/2021-04-20_IT101-DM/slides/list.json index 5dbc2360d7b5b8d68580868e6431ce26e8746eb1..17136d973bc9a81e70687fa1934d0f5b4f9c5baf 100644 --- a/2021/2021-04-20_IT101-DM/slides/list.json +++ b/2021/2021-04-20_IT101-DM/slides/list.json @@ -1,17 +1,19 @@ [ - {"filename": "index.md"}, - {"filename": "introduction.md"}, - {"filename": "data-introduction.md"}, - {"filename": "data_flow.md"}, - {"filename": "ingestion.md"}, - {"filename": "storage_setup.md"}, - {"filename": "data-housekeeping.md"}, - {"filename": "howtos.md"}, - {"filename": "reproducibility.md"}, - {"filename": "code_versioning.md"}, - {"filename": "visualization.md"}, - {"filename": "problem_solving.md"}, - {"filename": "fair-principles.md"}, - {"filename": "r3_group.md"}, - {"filename": "thanks.md"} -] + { "filename": "index.md" }, + { "filename": "introduction.md" }, + { "filename": "access_management.md" }, + { "filename": "data-introduction.md" }, + { "filename": "data_flow.md" }, + { "filename": "ingestion.md" }, + { "filename": "storage_setup.md" }, + { "filename": "data-housekeeping.md" }, + { "filename": "howtos.md" }, + { "filename": "reproducibility.md" }, + { "filename": "code_versioning.md" }, + { "filename": "visualization.md" }, + { "filename": "data_life_cycle.md" }, + { "filename": "problem_solving.md" }, + { "filename": "fair-principles.md" }, + { "filename": "r3_group.md" }, + { "filename": "thanks.md" } +] \ No newline at end of file diff --git a/2021/2021-04-20_IT101-DM/slides/reproducibility.md b/2021/2021-04-20_IT101-DM/slides/reproducibility.md index a73310ceaf1031a2e79e0f55083319e52680f5cf..b93079f25ad16151f5e2db41b3d55f4c8dd6cb54 100644 --- a/2021/2021-04-20_IT101-DM/slides/reproducibility.md +++ b/2021/2021-04-20_IT101-DM/slides/reproducibility.md @@ -94,3 +94,4 @@ <img src="slides/img/red-cross.png" width="700px"><br> </div> </div> + diff --git a/2021/2021-04-20_IT101-DM/slides/storage_setup.md b/2021/2021-04-20_IT101-DM/slides/storage_setup.md index c4f5e9070cec562fe4ecf14589be1a07c99c647f..d321b5ccd652709e969a2027cac2d7c3a7c69a6a 100644 --- a/2021/2021-04-20_IT101-DM/slides/storage_setup.md +++ b/2021/2021-04-20_IT101-DM/slides/storage_setup.md @@ -4,12 +4,8 @@ * Regularly update your SW/OS * Encrypt movable media -### Passwords -* Strong passwords -* Password manager -* Safe password exchange channels -* Expiration time on password share +<div class="fragment" > ### Backup * take care of your own backups! @@ -24,6 +20,35 @@ <a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a> </div> +</div> + +<div class="fragment"> + +### Passwords + +* Strong passwords +* Password manager +* Safe password exchange channels +* Expiration time on password share +</div> + + + +# Storage set-up +## Password exchange channels +<div style="position:relative"> +<img src="slides/img/privateBin.png" height="350px"> +</div> +<div style="position:absolute;left:65%;top:85%"> + + +* Free service provided by LSCB at <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> +* **LUMS** account is required +* Set expiry period +* Can expire upon first access +* Password only accessible by sender and recipient +</div> + # Storage set-up diff --git a/2021/2021-07-27_IT101-DM/slides/access_management.md b/2021/2021-07-27_IT101-DM/slides/access_management.md index f4e62651e00172dba6c803541e71732fce082d7b..31e9003921e7780e252f2d0c42086c942c10f531 100644 --- a/2021/2021-07-27_IT101-DM/slides/access_management.md +++ b/2021/2021-07-27_IT101-DM/slides/access_management.md @@ -27,7 +27,7 @@ <div class="fragment"> * Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a> - * R3 Gitlab: <a href="https://git-r3lab.uni.lu" style="color:blue; font-size:0.8em;">git-r3lab.uni.lu</a> + * R3 Gitlab: <a href="https://gitlab.lcsb.uni.lu" style="color:blue; font-size:0.8em;">gitlab.lcsb.uni.lu</a> * Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> * LCSB Wiki page, Webdav, LCSB Analytics page diff --git a/2021/2021-07-27_IT101-DM/slides/r3_group.md b/2021/2021-07-27_IT101-DM/slides/r3_group.md index f652c8c5b66b0bd44a6adf4cbe139d539a9ffab3..938be19962589cadfed09a6aeb7bc2a091805159 100644 --- a/2021/2021-07-27_IT101-DM/slides/r3_group.md +++ b/2021/2021-07-27_IT101-DM/slides/r3_group.md @@ -81,7 +81,7 @@ Clinic - hands-on, meetings in groups, code review + suggestions<br> </div> <div class="profile-container"> - * Valentine Groues</li> + * Valentin </li> * <img src="slides/img/R3_profile_pictures/valentine_groues.png"> * Development