diff --git a/2021/2021-07-27_IT101-DM/slides/access_management.md b/2021/2021-07-27_IT101-DM/slides/access_management.md
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+# Access Management
+<div style="display:grid;grid-gap:100px;grid-template-columns: 40% 40%">
+<div >
+
+## UNI-LU Account
+  * Mails services including web mail: <a href="https://owa.uni.lu" style="color:blue; font-size:0.8em;">owa.uni.lu</a>
+  * Microsoft Office & Teams: <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>
+  * SAP services: <a href="https://fiori.uni.lu/fiori" style="color:blue; font-size:0.8em;">fiori.uni.lu/fiori</a>
+  * University's Intranet: <a href="https://intranet.uni.lux" style="color:blue; font-size:0.8em;">intranet.uni.lux</a>
+  * All remote work services : Webex, Slack...
+  
+
+</div>
+<div>
+<div class="fragment">
+
+## LUMS Account
+  * go to <a href="https://service.uni.lu" style="color:blue; font-size:0.8em;">service.uni.lu</a>: make a request and  go to <a href="https://lcsb-cdc-lums-02.uni.lu" style="color:blue; font-size:0.8em;">lums.uni.lu</a> to activate your account upon receiving credentials 
+
+  <div style="position:absolute;left:20%;top:90%">
+  <img src="slides/img/access.png" height="400px">
+  </div>
+
+  <div style="position:absolute;left:60%;top:90%">
+  <img src="slides/img/lums.png" height="400px">
+  </div>  
+<div class="fragment">  
+
+    * Owncloud: <a href="http://owncloud.lcsb.uni.lu" style="color:blue; font-size:0.8em;">owncloud.lcsb.uni.lu</a>
+    * R3 Gitlab: <a href="https://gitlab.lcsb.uni.lu" style="color:blue; font-size:0.8em;">gitlab.lcsb.uni.lu</a>
+    * Private Bin: <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
+    * LCSB Wiki page, Webdav, LCSB Analytics page
+
+
+</div>
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/code_versioning.md b/2021/2021-07-27_IT101-DM/slides/code_versioning.md
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+# Code versioning
+<div style="position:absolute; width:40%">
+
+**git**
+
+  * Current standard for code versioning
+  * Maintain versions of your code as it develops
+  * Local system, which does not require an online repository
+  * Repositories allow distributed development
+
+<img  align="middle" height="300px" src="slides/img/Git-logo.png">
+</div>
+
+<div class="fragment" style="position:absolute; left:50%; width:40%"">
+
+**git@lcsb** 
+* Recommended, supported repository
+* Allows tracking of issues
+* Ready for continous integration - code checked on commits to the repository.
+* [https://git-r3lab.uni.lu](https://git-r3lab.uni.lu)
+
+
+  **Use at LCSB** 
+
+   * All analyses code should be in a repository
+      * Minimally at submission of a manuscript
+      * Better daily
+      * Even better "analyses chunkwise"
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href="https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-07" style="color:grey; font-size:0.8em;">LCSB-POL-BIC-07 Source Code Management Policy</a>
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/data-housekeeping.md b/2021/2021-07-27_IT101-DM/slides/data-housekeeping.md
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+# Data housekeeping
+## File names
+<div  style="display:flex; position:static; width:100%">
+<div class="fragment" data-fragment-index="0" style="position:static; width:30%">
+
+### General pricinples  
+  * Machine readable
+  * Human readable
+  * Plays well with default ordering
+</div>
+<div class="fragment" data-fragment-index="1" style="position:absolute; left:33%; width:30%">
+
+### Separators  
+  * No spaces
+  * Underscore to separate
+  * Hyphen to combine
+  
+</div>
+<div class="fragment" data-fragment-index="2" style="position:absolute; left:66%; width:30%">
+
+### Date format follows **ISO 8601**<br>
+
+  2018-12-03<br> 
+  2018-12-06_1700  
+
+</div>
+</div>
+ 
+
+<div class="fragment" data-fragment-index="3" style="width:100%; position:static">
+<div style="position:absolute;width:55%">
+<b>Bad</b> names
+
+```bash
+ PhD-project-Jan19 alldata_final.foo
+ Finacial detailes BIocore 19/11/12.xls
+ ATACseq1Londonmapped.bam
+ Hlad.jez.M-L-průtoky JíObj.z Ohře-od 10-2011.xlsx
+```
+</div>
+<div style="position:relative;width:55%; bottom:20%; left:50%">
+<b>Good</b> names
+
+```bash
+Iris-setosa_samples_1927-05-12.csv
+PI102_Mouse12_EEG_2018-11-03_1245.tsv
+Bioinfiniti_FullProposal_2018-11-15_1655.do
+```
+</div>
+</div>
+<br>
+<br>
+<div class="fragment" data-fragment-index="3" style="width:100%;">
+From Jenny Bryan by CC-BY  
+(https://speakerdeck.com/jennybc/how-to-name-files)
+</div>
+
+
+
+# Data housekeeping
+## File organization
+* Have folder organization conventions for your **group**
+  * Per Paper
+  * Per Study/Project 
+  * Per Collaborator
+* Keep <b>readme files</b> for data  
+  * Title
+  * Date of Creation/Receipt
+  * Instrument or software specific information
+  * People involved
+  * Relations between multiple files/folders 
+
+* Separate files you are actively working from the old ones  
+* Orient newcomers to the group's conventions
+
+<div style="position:absolute;left:43%;top:10%">
+<img src="slides/img/folder_structure.png" height="700px">
+</div>
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href="https://riojournal.com/article/56508/" style="color:grey; font-size:0.8em;">Foundational Practices of Research Data Management</a>
+</div>
+
+
+
+# Data housekeeping
+<div style="position:absolute">
+
+## When working 
+  * Clarify and separate source and intermediate data
+  * Keep data copies to a **minimum**
+  * Cleanup post-analysis
+  * Cleanup copies created for presentations or for sharing
+</div> 
+<div style="position:relative;left:50%; width:40%">
+<img src="slides/img/cleaning-table.jpg" height="450px">
+</div>
+
+
+
+# Data housekeeping
+## End of project
+  * handover data to a new responsible when leaving
+  * data should be kept as a single copy on server-side storage 
+    * no copies on desktops and external devices
+  * non-proprietary formats
+  * minimal metadata
+  * sensitive data (e.g. whole genome) **must** be encrypted
+  <br/>
+  <br/>
+  * If not specified otherwise, data must be kept for **10 years** following project end for reproducibility purposes
+<aside class="notes">
+Note: sometimes it is hard to find/understand dataset 10 days old
+</aside>
+ 
+## In doubt on data archival?
+Contact R<sup>3</sup> for support on archival of datasets using tickets:
+  * https://service.uni.lu/sp
+  * Home > Catalog > LCSB > Biocore: Application services > Request for: Support
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-03" style="color:grey; font-size:0.8em;">Research Data Retention and Archival Policy</a>
+</div>
+
+
+
+# Data housekeeping - Summary
+## Server is your friend!
+  * Allows a consistent backup policy for your datasets
+  * Keeps number of copies to minimum
+  * Specification of clear access rights
+  * High accessibility
+  * Data are discoverable
+  * Server can't be stolen
+  
+## General guidelines
+  * Use institutional media for storage of **all** data
+  * Research data (particularly sensitive data) should be in a single source location
+  * Enable encryption for data stored on movable media
+  * Clarify and separate source and intermediate data
+  * Disable write access to relevant source data (read-only)
+  * Backup research data!
+  * Download Anti-virus software
+  * Generate checksums 
diff --git a/2021/2021-07-27_IT101-DM/slides/data-introduction.md b/2021/2021-07-27_IT101-DM/slides/data-introduction.md
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+# Data and metadata
+<div style="display:grid;grid-gap:100px;grid-template-columns: 40% 40%">
+<div >
+
+## Data
+  * "*information in digital form that can be transmitted or processed*"
+  <p align="right">-- Merriam-Webster dictionary</p>
+  * "*information in an electronic form that can be stored and processed by a computer*"
+  <p align="right">--Cambridge dictionary</p>
+
+</div>
+<div>
+
+## Metadata
+  * data describing other data
+  * information that is given to describe or help you use other information
+  * metadata are data
+    * can be processed and analyzed
+</div>
+</div>
+
+<div class="fragment">
+
+## Metadata examples:
+<div style="position:absolute">
+  <ul>
+    <li> LabBook </li>
+    <li> author/owner of the data</li>
+    <li> origin of the data 
+    <li> data type
+  </ul>
+</div>
+<div style="position:absolute;left:25%">
+  <ul>
+    <li> description of content </li>
+    <li> modification date </li>
+    <li> description of modification </li>
+    <li> location </li>
+  </ul>
+</div> 
+<div style="position:relative;left:50%;top:0.7em">
+  <ul> 
+    <li> calibration readings</li>
+    <li> software/firmware version</li>
+    <li> data purpose</li>
+    <li> means of creation</li>
+  </ul>
+</div>
+</div>
+
+<div class="fragment">
+<br>
+</center>
+<center style="color:red">!Insufficient metadata make the data useless!</center>
+</div>
+<aside class="notes">
+Sometimes metadata collection takes more time than data collection
+</aside>
+
+
+
+# LCSB research data
+three categories:
+  * **Primary data** 
+    * scientific data 
+      * measurements, images, observations, notes, surveys, ...
+      * models, software codes, libraries, ...
+    * metadata directly describing the data
+      * data dictionaries
+      * format, version, coverage descriptions, ...
+
+  * **Research record**
+    * description of the research process, including experiment 
+      * experiment set-up
+      * followed protocols
+      * ...
+    
+  * **Project accompanying documentation** 
+      * ethical approvals, information on the consent
+      * collaboration agreements
+      * intellectual property ownership
+      * other relevant documentation
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right;">
+<a href="https://howto.lcsb.uni.lu/internal/policies/LCSB-POL-BIC-03/" style="color:grey; font-size:0.8em;">LCSB-POL-BIC-03 Research Data Retention and Archival Policy</a>
+</div>
\ No newline at end of file
diff --git a/2021/2021-07-27_IT101-DM/slides/data_flow.md b/2021/2021-07-27_IT101-DM/slides/data_flow.md
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+# Typical flow of data
+
+<div style="display:grid;grid-gap:10px;grid-template-columns: 30% 20% 30%;
+  grid-auto-flow:column;grid-template-rows: repeat(4,auto);position:relative;left:8%">
+  
+<div class="content-box fragment" data-fragment-index="1">
+  <div class="box-title red">Source data</div>
+  <div class="content">
+
+  * Experimental results
+  * Large data sets  
+  * Manually collected data  
+  * External
+
+  </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="2">
+  <div class="box-title yellow">Intermediate</div>
+  <div class="content">
+
+  * Derived data 
+  * Tidy data 
+  * Curated sets
+
+  </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="3">
+  <div class="box-title blue">Analyses</div>
+  <div class="content">
+
+  * Exploratory
+  * Model building
+  * Hypothesis testing
+
+  </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="4">
+  <div class="box-title green">Dissemination</div>
+  <div class="content">
+
+  * Manuscript, report, presentation, ...
+
+  </div>
+</div>
+<center>
+<img src="slides/img/data-flow_sources.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_transformation.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_chart.png" height=60%>
+</center>
+<center>
+<img src="slides/img/data-flow_paper.png" height=60%>
+</center>
+
+<div class="content-box fragment" data-fragment-index="5">
+<div class="box-title red">Preserve</div>
+  <div class="content">
+
+  * Version data sets 
+  * Backup
+  * Protect
+  
+  </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="6">
+  <div class="box-title yellow">Reproduce</div>
+  <div class="content">
+
+  * Automate your builds 
+  * Use workflow tools (e.g. Snakemake)
+  
+  </div>
+</div>
+
+
+<div class="content-box fragment" data-fragment-index="7">
+<div class="box-title blue">Trace</div>
+  <div class="content">
+
+ * Multiple iterations.
+ * Code versioning (Git)
+
+ </div>
+</div>
+
+<div class="content-box fragment" data-fragment-index="8">
+<div class="box-title green">Track</div>
+  <div class="content">
+
+   * Through multiple versions
+ 
+   </div>
+</div>
+
+</div>
+<aside class="notes">
+flow of the data is downstream (mostly), but you are going back and forth
+applies to all data (financial report, lab safety assessment)
+</aside>
diff --git a/2021/2021-07-27_IT101-DM/slides/data_life_cycle.md b/2021/2021-07-27_IT101-DM/slides/data_life_cycle.md
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+
+# Some practical recommandations
+
+* Do your data processing according to the data life cycle steps
+
+<div class='fragment' style="position:relative;left:25%;top:60%">
+<img  align="middle" height="300px" src="slides/img/rdm-cycle.png">
+</div>
+<div class="fragment">
+
+* Use data management planning tools:
+  * DMPonline <a href="https://dmponline.elixir-luxembourg.org/" style="color:blue; font-size:0.8em;">https://dmponline.elixir-luxembourg.org/</a>
+   <img  src="slides/img/dmponline_logo.png" height="50px">
+  * DS Wizard <a href="https://learning.ds-wizard.org/" style="color:blue; font-size:0.8em;">https://learning.ds-wizard.org/</a> 
+  <img  src="slides/img/dsw_logo.png" height="100px">
+  
+<div>
+
+<div class="fragment">
+
+* Annotate your data and code using Ontologies and standardised metadata
+
+</div>
\ No newline at end of file
diff --git a/2021/2021-07-27_IT101-DM/slides/fair-principles.md b/2021/2021-07-27_IT101-DM/slides/fair-principles.md
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+# FAIR (meta)data principles
+ * dates back to 2014
+ * well accepted by scientific community
+ * necessity in data driven science
+ * officially embraced by EU and G20
+ * required by funding agencies and journal publishers
+ 
+<center>
+<img src="slides/img/fair-principles.png" height="400px">
+</center>
+<br>
+<br>
diff --git a/2021/2021-07-27_IT101-DM/slides/howtos.md b/2021/2021-07-27_IT101-DM/slides/howtos.md
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+# LCSB How-Tos
+<br>
+https://howto.lcsb.uni.lu/
+<center>
+  <img src="slides/img/howtocard.png" width="50%">
+</center>
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diff --git a/2021/2021-07-27_IT101-DM/slides/img/scripts/ggplot_visualization.R b/2021/2021-07-27_IT101-DM/slides/img/scripts/ggplot_visualization.R
new file mode 100644
index 0000000000000000000000000000000000000000..ac48ba28f1d937174ba5acdc0260e41321a201fc
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/img/scripts/ggplot_visualization.R
@@ -0,0 +1,22 @@
+
+library(ggplot2)
+library(data.table)
+library(ggpubr)
+data(iris)
+iris <- data.table(iris)
+iris <- iris[c(1:103)]
+
+g1 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+  geom_bar(aes(fill = Species),stat="summary", fun.y="mean" ) +guides(fill = F)+
+  ylim(c(0,8)) + ylab("Mean Sepal Lenght ")
+
+g2 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+  geom_boxplot(aes(fill = Species))+
+  ylim(c(0,8))+guides(fill = F)+ylab("Sepal Length")
+
+g3 <- ggplot(iris, aes(x = Species, y = Sepal.Length))+
+  geom_boxplot(aes(fill = Species))+
+  ylim(c(0,8))+ geom_point( position="jitter")+
+  guides(fill = F)+ylab("Sepal Length")
+
+ggarrange(g1, g2, g3, nrow = 1)+ggsave(filename = "../plot-data.png", device = "png", width =12, height = 6)
diff --git a/2021/2021-07-27_IT101-DM/slides/img/undraw_secure_server_s9u8.png b/2021/2021-07-27_IT101-DM/slides/img/undraw_secure_server_s9u8.png
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diff --git a/2021/2021-07-27_IT101-DM/slides/index.md b/2021/2021-07-27_IT101-DM/slides/index.md
new file mode 100644
index 0000000000000000000000000000000000000000..6ac2ae378a2a442174b519beb7bd186a70419b24
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/index.md
@@ -0,0 +1,20 @@
+# IT101 - Working with computers
+<br>IT101 - Working with computers<br>
+## July 27th, 2021
+
+<div style="top: 6em; left: 0%; position: absolute;">
+    <img src="theme/img/lcsb_bg.png">
+</div>
+
+<div style="top: 5em; left: 60%; position: absolute;">
+    <img src="slides/img/r3-training-logo.png" height="200px">
+    <br><br><br><br>
+    <h3></h3>
+    <br><br><br>
+    <h4>
+        Nene Barry<br>
+        Data Steward<br>
+        nene.barry@uni.lu<br>
+        <i>Luxembourg Centre for Systems Biomedicine</i>
+    </h4>
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/ingestion.md b/2021/2021-07-27_IT101-DM/slides/ingestion.md
new file mode 100644
index 0000000000000000000000000000000000000000..383467f0027ee1671425311aa48254ff9207ea4d
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/ingestion.md
@@ -0,0 +1,90 @@
+# Data housekeeping
+## Available data storage
+<div class='fragment' style="position:absolute">
+<img src="slides/img/LCSB_storages_full.png" height="750px">
+</div>
+
+<div class='fragment' style="position:relative">
+<img src="slides/img/LCSB_storages_personal-crossed.png" height="750px">
+
+<div style="position:absolute;left:65%;top:60%">
+
+* Unless consortium/project has formally agreed to use a secure commercial cloud
+
+</div>
+
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+
+
+
+# Data ingestion: Transfer and Integrity
+  * When sending data: <font color="red">Do not use emails, use secure platforms (Cloud, Aspera, Atlas share...)!</font>
+
+<div class="fragment">
+Data can be corrupted:
+
+  * (non-)malicious modification
+  * faulty file transfer
+  * disk corruption
+</div>
+  
+<div class="fragment">
+
+### Solution
+
+ * disable write access to the source data
+ * generate checksums!
+ 
+<div style="position:absolute;left:40%;top:30%">
+<img src="slides/img/checksum.png" width="500px">
+</div>
+</div>
+
+<div class="fragment" style="position:relative; left:0%">
+
+
+## When to generate checksums?
+* before data transfer
+  - new dataset from collaborator
+  - upload to remote repository
+
+* long term storage
+  - master version of dataset
+  - snapshot of data for publication
+</div>
+
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+
+
+# Data ingestion/Integrity
+## Encryption
+<div class='fragment' style="position:relative;left:25%;top:60%">
+<img  align="middle" height="300px" src="slides/img/encryption.png">
+</div>
+
+<div class='fragment'>
+
+* Guaranted confidentiality
+</div>
+<div class='fragment'>
+
+* Encryption key need to be kept safe
+</div>
+<div class='fragment'>
+
+* <font color= red>Loosing your encryption key means loosing your data!</font>
+</div>
+<div class='fragment'>
+
+* Make a off-site backup of your data
+</div>
+
+
diff --git a/2021/2021-07-27_IT101-DM/slides/introduction.md b/2021/2021-07-27_IT101-DM/slides/introduction.md
new file mode 100644
index 0000000000000000000000000000000000000000..fed0b0971b7d1f868f2fd8213461c724834da16a
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/introduction.md
@@ -0,0 +1,28 @@
+# Introduction
+<div  class="fragment" style="position:absolute">
+<img   height="450px" src="slides/img/wordcloud.png"><br>
+
+## Learning objectives
+
+  * How to manage your data
+  * How to look and analyze your data
+  * Solving issues with computers
+  * Reproduciblity in the research data life cycle
+
+</div>
+<div  class="fragment" style="position:relative;left:50%; width:40%">
+<div >
+<center>
+<img   height="405px" src="slides/img/rudi_balling.jpg"><br>
+Prof. Dr. Rudi Balling, director
+</center>
+</div>
+
+## Pertains to practically all people at LCSB
+   * Scientists
+   * PhD candidates
+   * Technicians
+   * Administrators
+</div>
+
+
diff --git a/2021/2021-07-27_IT101-DM/slides/list.json b/2021/2021-07-27_IT101-DM/slides/list.json
new file mode 100644
index 0000000000000000000000000000000000000000..17136d973bc9a81e70687fa1934d0f5b4f9c5baf
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/list.json
@@ -0,0 +1,19 @@
+[
+    { "filename": "index.md" },
+    { "filename": "introduction.md" },
+    { "filename": "access_management.md" },
+    { "filename": "data-introduction.md" },
+    { "filename": "data_flow.md" },
+    { "filename": "ingestion.md" },
+    { "filename": "storage_setup.md" },
+    { "filename": "data-housekeeping.md" },
+    { "filename": "howtos.md" },
+    { "filename": "reproducibility.md" },
+    { "filename": "code_versioning.md" },
+    { "filename": "visualization.md" },
+    { "filename": "data_life_cycle.md" },
+    { "filename": "problem_solving.md" },
+    { "filename": "fair-principles.md" },
+    { "filename": "r3_group.md" },
+    { "filename": "thanks.md" }
+]
\ No newline at end of file
diff --git a/2021/2021-07-27_IT101-DM/slides/overview.md b/2021/2021-07-27_IT101-DM/slides/overview.md
new file mode 100644
index 0000000000000000000000000000000000000000..6f9143c7c64fa539eb44c3ea5ff9eec076701879
--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/overview.md
@@ -0,0 +1,25 @@
+## Overview
+
+0. Introduction - learning objectives + targeted audience
+1. Data workflow
+1. Ingestion:
+    * receiving/sending/sharing data
+    * file naming
+    * checksums
+    * backup
+ 1. making data tidy 
+    * what is table 
+    * 
+ 1. Learning to code workflows and analyses - excel files, coding
+ 1. Code versioning and reproducibility
+ 1. Visualization
+  * see the data
+ 1. problem solving
+    * guide
+    * rubberducking
+    * google for help
+    * oracle
+  1. R3 team
+  1. Acknowledgment
+  
+  1. data minimization
diff --git a/2021/2021-07-27_IT101-DM/slides/problem_solving.md b/2021/2021-07-27_IT101-DM/slides/problem_solving.md
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@@ -0,0 +1,11 @@
+# Problem solving
+A guide for solving computing issues
+
+1. Express the problem 
+  * Write down what you want to achieve
+2. Search for help 
+  * Read **FAQs**, **help pages** and the **official documentation** well before turning to Google
+  * Use stack exchange, forums and related resources (carefully)
+3. Ask an expert 
+    * Submit the problem in writing
+    * Make the question interesting
diff --git a/2021/2021-07-27_IT101-DM/slides/r3_group.md b/2021/2021-07-27_IT101-DM/slides/r3_group.md
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--- /dev/null
+++ b/2021/2021-07-27_IT101-DM/slides/r3_group.md
@@ -0,0 +1,140 @@
+# Responsible and Reproducible Research (R<sup>3</sup>)
+## What is R<sup>3</sup>?
+
+
+A multi-facetted change management
+process built on 3 pillars:
+
+- R3 pathfinder
+
+- R3 school
+
+- R3 accelerator
+
+Common link module: R3 clinic
+
+<div style="top: -1em; left: 50%; position: absolute;">
+    <img src="slides/img/3pillars-full.png">
+</div>
+  
+<br>
+<br>
+
+<aside class="notes">
+Pathfinder - policies, finding optimal data management changes<br>
+School - courses, howtos, trainnings<br>
+Accelerator - advanced teams and their boost/support, CI/CD setup<br>
+Clinic - hands-on, meetings in groups, code review + suggestions<br>
+</aside>
+
+## R<sup>3</sup> Training
+  * LCSB's Monthly Data Management and Data Protection training
+  * ELIXIR Luxembourg's trainings <br>
+   https://elixir-luxembourg.org/training
+    * First steps with R (2021-07-27)
+    * Statistical tests and statistical learning for omics data (2021-09-14)
+  * R<sup>3</sup> school Git basics - every 4 months 
+  <aside class="notes">
+    Direct newcommers to this monthly training  
+  </aside>
+
+
+
+# Responsible and Reproducible Research (R<sup>3</sup>)
+<section data-transition="none" data-background-image="slides/img/r3-training-logo.png" data-background-size="1000px" data-background-opacity="0.1">
+</section>
+<div style="display:block;text-align:center;position:relative;" >
+<div class="profile-container">
+
+  * Reinhard Schneider
+  * <img src="slides/img/R3_profile_pictures/reinhard_schneider.png">
+  * Head of Bioinformatics Core
+
+</div>
+<div class="profile-container">
+
+  * Pinar Alper
+  * <img src="slides/img/R3_profile_pictures/pinar_alper.png">
+  * Datasteward
+
+</div>
+<div class="profile-container">
+
+  * Yohan Yarosz</li>
+  * <img src="slides/img/R3_profile_pictures/yohan_yarosz.png">
+  * Development
+
+</div>
+<div class="profile-container">
+
+  * Laurent Heirendt</li>
+  * <img src="slides/img/R3_profile_pictures/laurent_heirendt.png">
+  * Git, CI
+
+</div>
+<div class="profile-container">
+
+  * Sarah Peter</li>
+  * <img src="slides/img/R3_profile_pictures/sarah_peter.png">
+  * Infrastructure
+
+</div>
+<div class="profile-container">
+
+  * Valentin Grouès</li>
+  * <img src="slides/img/R3_profile_pictures/valentine_groues.png">
+  * Development
+  
+</div>
+<div class="profile-container">
+
+  * Vilem Ded</li>
+  * <img src="slides/img/R3_profile_pictures/vilem_ded.png">
+  * Datasteward
+  
+</div>
+<div class="profile-container">
+
+  * Noua Toukourou</li>
+  * <img src="slides/img/R3_profile_pictures/noua_toukourou.png">
+  * Infrastructure
+  
+</div>
+<div class="profile-container">
+
+  * Alexey Kolodkin</li>
+  * <img src="slides/img/R3_profile_pictures/alexey_kolodkin.png">
+  * Datasteward
+  
+</div>
+<div class="profile-container">
+
+  * Maharshi Vyas</li>
+  * <img src="slides/img/R3_profile_pictures/maharshi_vyas.png">
+  * Infrastructure
+  
+</div>
+
+<div class="profile-container">
+
+  * Nene Barry</li>
+  * <img src="slides/img/R3_profile_pictures/nene_barry.png">
+  * Datasteward
+  
+</div>
+
+<div class="profile-container">
+
+  * Karim Chaouch</li>
+  * <img src="slides/img/R3_profile_pictures/karim_chaouch.png">
+  * Development
+  
+</div>
+<div class="profile-container">
+
+  * Christophe Trefois
+  * <img src="slides/img/R3_profile_pictures/christophe_trefois.png">
+  * R<sup>3</sup> team lead
+
+</div>
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/reproducibility.md b/2021/2021-07-27_IT101-DM/slides/reproducibility.md
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@@ -0,0 +1,97 @@
+# Reproducibility
+* ensures credibility
+* key requirement for follow-up and collaborative studies
+
+<div style="position:absolute">
+<img src="slides/img/reproducibility_nature.png" height="650px">
+</div>
+
+<div class="fragment" style="position:relative;left:50%">
+
+## Why is our workflow not reproducible?
+
+ Lack of provenance:
+  * Input data downloaded from “some website”
+  * Copy & paste operations
+  * Manual text entry
+  * Analysis not coded
+ 
+</div>
+
+
+
+# Reproducibility
+## Learning to code workflows and analyses
+<div style="display:inline-grid;grid-gap: 40px;grid-template-columns: auto auto;position:relative;left:12%">
+<div class="fragment">
+<div class="content-box">
+<div class="box-title red">Spreadsheets alone</div>
+<div class="content">
+
+  * Is great for looking at data.
+  * Data entry is fast.
+  * Analysis flow is hidden and not in focus.
+  
+</div>
+</div>
+<div style="text-align:center">
+<img src="slides/img/excel_data-sheet.png" height="280px">
+</div>
+</div>
+
+<div class="fragment">
+<div class="content-box">
+<div class="box-title">Coding</div>
+<div class="content">
+
+  * Is great for controlling analysis
+  * Data is hidden.
+  * Flow is visible.
+</div> 
+</div> 
+<img src="slides/img/code-example.png"  height="280px">
+</div>
+</div>
+
+<div class="content-box fragment" style="left:15%;width:60%;position:relative">
+<div class="box-title green">Develop data science skills</div>
+<div class="content">
+
+  * Develop good data management and analysis habits.
+  * Start coding your analysis within spreadsheets.
+  * Make yourself familiar with a statistics environment such as R, Python or Matlab
+  * No need to learn a high level programming language such as C++ or Java.
+
+</div>
+</div>
+
+</div>
+
+
+
+# Table
+<div style="position:absolute">
+"Tabular format of data"
+
+### Header
+
+ * one line!
+ * **good** names of columns
+ 
+### Rows
+ * represent observations/entities
+ 
+### Columns
+  * represent property of the observations
+  * one data type
+</div>
+<div style="left:50%; position:relative; top:-2em">
+<img src="slides/img/excel_data-sheet.png" width="700px">
+<div class="fragment" data-fragment-index="3" style="position:absolute">
+<img src="slides/img/excel_analyses-sheet.jpeg" width="700px"><br>
+</div>
+<div class="fragment" data-fragment-index="4" style="position:relative">
+<img src="slides/img/red-cross.png" width="700px"><br>
+</div>
+</div>
+
diff --git a/2021/2021-07-27_IT101-DM/slides/storage_setup.md b/2021/2021-07-27_IT101-DM/slides/storage_setup.md
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@@ -0,0 +1,79 @@
+# Storage set-up
+
+* Download Anti-virus software
+* Regularly update your SW/OS
+* Encrypt movable media
+
+
+<div class="fragment" >
+
+### Backup
+  * take care of your own backups!
+  * don't work on your backup copy!
+  * minimum is <b>3-2-1 backup rule</b>
+
+
+<div style="position:absolute;right:10%;top:10%">
+<img src="slides/img/undraw_secure_server_s9u8.png" height="750px">
+</div>
+<div style="position:absolute; width:45%; left:50%; top:28em; text-align:right">
+<a href=" https://howto.lcsb.uni.lu/?policies:LCSB-POL-BIC-02" style="color:grey; font-size:0.8em;">Data Storage and Backup Policy</a>
+</div>
+
+</div>
+
+<div class="fragment">
+
+### Passwords
+
+* Strong passwords
+* Password manager
+* Safe password exchange channels
+* Expiration time on password share
+</div>
+
+
+
+# Storage set-up
+## Password exchange channels
+<div style="position:relative">
+<img src="slides/img/privateBin.png" height="350px">
+</div>
+<div style="position:absolute;left:65%;top:85%">
+
+
+* Free service provided by LSCB at <a href="https://privatebin.lcsb.uni.lu" style="color:blue; font-size:0.8em;">privatebin.lcsb.uni.lu</a> 
+* **LUMS** account is required
+* Set expiry period
+* Can expire upon first access
+* Password only accessible by sender and recipient
+</div>
+
+
+
+# Storage set-up
+## Backup - Central IT/LCSB
+<div style="position:relative">
+<img src="slides/img/LCSB_storages_backed-up.png" height="750px">
+</div>
+<div style="position:absolute;left:65%;top:60%">
+
+Server administrators take care of:
+* server backups
+* LCSB OwnCloud backups
+* group/application server backups (not always)
+
+</div>
+
+
+
+# Storage set-up
+## Backup - personal research data
+<div style="position:relative">
+<img src="slides/img/LCSB_storages_backup.png" height="750px">
+</div>
+<div style="position:absolute;left:55%;top:70%">
+
+<font color="red">One version should reside on Atlas!</font>
+
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/thanks.md b/2021/2021-07-27_IT101-DM/slides/thanks.md
new file mode 100644
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+++ b/2021/2021-07-27_IT101-DM/slides/thanks.md
@@ -0,0 +1,42 @@
+# Thank you.<sup> </sup>
+<center><img src="slides/img/r3-training-logo.png" height="200px"></center>
+<br>
+<br>
+<br>
+<br>
+<center>
+Contact us if you need help:
+
+<a href="mailto:lcsb-r3@uni.lu">lcsb-r3@uni.lu</a>
+</center>
+<div style="position:absolute">
+Links:
+
+HowTo Cards / Policies: https://howto.lcsb.uni.lu/
+
+Course Slides: https://courses.lcsb.uni.lu/
+
+Internal Presentations: https://presentations.lcsb.uni.lu/
+
+LCSB GitLab: https://gitlab.lcsb.uni.lu/
+
+HPC: https://hpc.uni.lu/
+
+Service Portal: https://service.uni.lu/sp
+
+LCSB intranet: https://intranet.uni.lux
+</div>
+<div style="position:relative;top:1.5em;left:55%;width:45%">
+Avalable SW and tools:
+<div style="margin-left: 20px;">
+SIU managed:
+
+&ensp; - Service Portal > All Catalogs > IT > Softwares
+</div>
+<div style="margin-left: 20px;">
+LCSB managed:
+
+&ensp; - Service Portal > Knowledge > FAQ - Corporate Software\
+&ensp; - LCSB intranet > Science tab > Tools
+</div>
+</div>
diff --git a/2021/2021-07-27_IT101-DM/slides/visualization.md b/2021/2021-07-27_IT101-DM/slides/visualization.md
new file mode 100644
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@@ -0,0 +1,21 @@
+# Visualization
+<center>
+
+**Plot your data!**
+<figure>
+  <img src="slides/img/DinoSequentialSmaller.gif" height="500px">
+  <blockquote>"never trust summary statistics alone; always visualize your data"</blockquote>
+  <figcaption>--Alberto Cairo</figcaption>
+</figure> 
+</center>
+
+
+
+# Visualization
+<center>
+
+**Plot your data!**
+<figure>
+  <img src="slides/img/plot-data.png" height="800px">
+</figure> 
+</center>