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This project is mirrored from https://github.com/LCSB-BioCore/FBCModelTests.jl.git. Pull mirroring updated .
  • v0.3.0
    [Diff since v0.2.5](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.5...v0.3.0)
    
    **Closed issues:**
    - Make a commandline tool that simplifies generating the FROG reports. (#21)
    - Metabolite duplication is too sensitive (#77)
    
    **Merged pull requests:**
    - allow "evaluated" explanations in `@atest` (#75) (@exaexa)
    - Small cosmetic fixes for Memote.jl (#76) (@stelmo)
    - CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#80) (@github-actions[bot])
  • v0.2.5
    [Diff since v0.2.4](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.4...v0.2.5)
    
    **Closed issues:**
    - Change default `ignored_reactions` to use SBO terms (#10)
    - Improve heuristic identification of transport reactions (#32)
    - Investigate problem with reaction annotation regexes (#40)
    - Group FVA in tests (#52)
    
    **Merged pull requests:**
    - FROG: put report files into a separate OMEX subdir (#69) (@exaexa)
    - Improve memote.jl (#70) (@stelmo)
    - Improve to readme for the MEMOTE additions (#71) (@stelmo)
    - clean up gitignore (#72) (@exaexa)
    - Make test output neater (#73) (@exaexa)
    - Truncate memote test output (#74) (@stelmo)
  • v0.2.4
    [Diff since v0.2.3](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.3...v0.2.4)
    
    **Merged pull requests:**
    - Improve the comparison tooling (#68) (@exaexa)
  • v0.2.3
    [Diff since v0.2.2](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.2...v0.2.3)
    
    **Closed issues:**
    - use `Base.@kwdef` for setting up defaults for constant-holding structures (#51)
    
    **Merged pull requests:**
    - Add @kwdef to constructors (#64) (@stelmo)
    - implement a small OMEX packer (#65) (@exaexa)
    - finally fix the flux-in-variability check (#66) (@exaexa)
  • v0.2.2
    [Diff since v0.2.1](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.1...v0.2.2)
    
    **Merged pull requests:**
    - Fix flux column in `02_fva.tsv` (#63) (@exaexa)
  • v0.2.1
    [Diff since v0.2.0](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.0...v0.2.1)
    
    **Merged pull requests:**
    - update the frog report format to 0.1.2 (#62) (@exaexa)
  • v0.2.0
    [Diff since v0.1.0](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.1.0...v0.2.0)
    
    **Closed issues:**
    - Add additional tests (#38)
    
    **Merged pull requests:**
    - added memote consistency tests (#50) (@Fl-Sch)
    - some frontend improvements (#53) (@exaexa)
    - Extend memote tests to include purposefully broken (or fixed) models (#54) (@stelmo)
    - fix output of empty tables in FROG (#55) (@exaexa)
    - Sync FROG output with the latest spec, support solver modifications (#56) (@exaexa)
    - include ccov badge (#57) (@exaexa)
    - frog: standardize the tolerance computation (#58) (@exaexa)
    - do not throw on loading less-than-fatally-broken SBML (#59) (@exaexa)
  • v0.1.0
    **Closed issues:**
    - Implement all memote-style tests (#23)
    - Organize tests into modules to make finding them easier from the repl (#39)
    - verify SHA of all downloaded test files (#42)
    
    **Merged pull requests:**
    - Ignore vscode (#1) (@stelmo)
    - Check if model is mass and charge balanced (#2) (@stelmo)
    - add compathelper and formattercmd (#3) (@exaexa)
    - add CI (#4) (@exaexa)
    - CompatHelper: add new compat entry for DocStringExtensions at version 0.9, (keep existing compat) (#5) (@github-actions[bot])
    - CompatHelper: add new compat entry for JSON at version 0.21, (keep existing compat) (#6) (@github-actions[bot])
    - CompatHelper: add new compat entry for COBREXA at version 1, (keep existing compat) (#7) (@github-actions[bot])
    - CompatHelper: add new compat entry for MD5 at version 0.2, (keep existing compat) (#8) (@github-actions[bot])
    - add docs (skeleton) (#9) (@exaexa)
    - Add test for erroneous energy generating cycles (#11) (@stelmo)
    - Implement basic consistency test (#13) (@stelmo)
    - CompatHelper: add new compat entry for JuMP at version 1, (keep existing compat) (#14) (@github-actions[bot])
    - Added metabolite annotation tests and a test set for control (#15) (@vm-vh)
    - Added gene annotation tests and a test set for control (#16) (@Fl-Sch)
    - FROG finalization (#17) (@exaexa)
    - CompatHelper: add new compat entry for SBML at version 1, (keep existing compat) (#18) (@github-actions[bot])
    - Add more metabolic model tests (#19) (@stelmo)
    - Add readme to make the package lookable (#20) (@exaexa)
    - build docker containers (#22) (@exaexa)
    - include memote stuff in docs (#24) (@exaexa)
    - Add tests for GPRs (#25) (@stelmo)
    - Biomass tests (#28) (@stelmo)
    - move Vincent to the correct spot :] (#29) (@exaexa)
    - Add network tests (#30) (@stelmo)
    - turn off tests against julia-nightly (#31) (@exaexa)
    - Add reaction annotation tests (#33) (@vm-vh)
    - Reaction information tests (#34) (@stelmo)
    - CompatHelper: add new compat entry for PeriodicTable at version 1, (keep existing compat) (#35) (@github-actions[bot])
    - improve the no-op report from autoformatter (#36) (@exaexa)
    - Add memote test suite (#37) (@stelmo)
    - frog modularization & testing (#43) (@exaexa)
    - Reorganize the memote tests (#44) (@stelmo)
    - add tagbot action (#45) (@exaexa)
    - add julia compat (#46) (@exaexa)