Tags

[Diff since v0.2.5](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.5...v0.3.0)

**Closed issues:**
- Make a commandline tool that simplifies generating the FROG reports. (#21)
- Metabolite duplication is too sensitive (#77)

**Merged pull requests:**
- allow "evaluated" explanations in `@atest` (#75) (@exaexa)
- Small cosmetic fixes for Memote.jl (#76) (@stelmo)
- CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#80) (@github-actions[bot])

[Diff since v0.2.4](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.4...v0.2.5)

**Closed issues:**
- Change default `ignored_reactions` to use SBO terms (#10)
- Improve heuristic identification of transport reactions (#32)
- Investigate problem with reaction annotation regexes (#40)
- Group FVA in tests (#52)

**Merged pull requests:**
- FROG: put report files into a separate OMEX subdir (#69) (@exaexa)
- Improve memote.jl (#70) (@stelmo)
- Improve to readme for the MEMOTE additions (#71) (@stelmo)
- clean up gitignore (#72) (@exaexa)
- Make test output neater (#73) (@exaexa)
- Truncate memote test output (#74) (@stelmo)

[Diff since v0.2.3](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.3...v0.2.4)

**Merged pull requests:**
- Improve the comparison tooling (#68) (@exaexa)

[Diff since v0.2.2](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.2...v0.2.3)

**Closed issues:**
- use `Base.@kwdef` for setting up defaults for constant-holding structures (#51)

**Merged pull requests:**
- Add @kwdef to constructors (#64) (@stelmo)
- implement a small OMEX packer (#65) (@exaexa)
- finally fix the flux-in-variability check (#66) (@exaexa)

[Diff since v0.2.1](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.1...v0.2.2)

**Merged pull requests:**
- Fix flux column in `02_fva.tsv` (#63) (@exaexa)

[Diff since v0.2.0](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.2.0...v0.2.1)

**Merged pull requests:**
- update the frog report format to 0.1.2 (#62) (@exaexa)

[Diff since v0.1.0](https://github.com/LCSB-BioCore/FBCModelTests.jl/compare/v0.1.0...v0.2.0)

**Closed issues:**
- Add additional tests (#38)

**Merged pull requests:**
- added memote consistency tests (#50) (@Fl-Sch)
- some frontend improvements (#53) (@exaexa)
- Extend memote tests to include purposefully broken (or fixed) models (#54) (@stelmo)
- fix output of empty tables in FROG (#55) (@exaexa)
- Sync FROG output with the latest spec, support solver modifications (#56) (@exaexa)
- include ccov badge (#57) (@exaexa)
- frog: standardize the tolerance computation (#58) (@exaexa)
- do not throw on loading less-than-fatally-broken SBML (#59) (@exaexa)

**Closed issues:**
- Implement all memote-style tests (#23)
- Organize tests into modules to make finding them easier from the repl (#39)
- verify SHA of all downloaded test files (#42)

**Merged pull requests:**
- Ignore vscode (#1) (@stelmo)
- Check if model is mass and charge balanced (#2) (@stelmo)
- add compathelper and formattercmd (#3) (@exaexa)
- add CI (#4) (@exaexa)
- CompatHelper: add new compat entry for DocStringExtensions at version 0.9, (keep existing compat) (#5) (@github-actions[bot])
- CompatHelper: add new compat entry for JSON at version 0.21, (keep existing compat) (#6) (@github-actions[bot])
- CompatHelper: add new compat entry for COBREXA at version 1, (keep existing compat) (#7) (@github-actions[bot])
- CompatHelper: add new compat entry for MD5 at version 0.2, (keep existing compat) (#8) (@github-actions[bot])
- add docs (skeleton) (#9) (@exaexa)
- Add test for erroneous energy generating cycles (#11) (@stelmo)
- Implement basic consistency test (#13) (@stelmo)
- CompatHelper: add new compat entry for JuMP at version 1, (keep existing compat) (#14) (@github-actions[bot])
- Added metabolite annotation tests and a test set for control (#15) (@vm-vh)
- Added gene annotation tests and a test set for control (#16) (@Fl-Sch)
- FROG finalization (#17) (@exaexa)
- CompatHelper: add new compat entry for SBML at version 1, (keep existing compat) (#18) (@github-actions[bot])
- Add more metabolic model tests (#19) (@stelmo)
- Add readme to make the package lookable (#20) (@exaexa)
- build docker containers (#22) (@exaexa)
- include memote stuff in docs (#24) (@exaexa)
- Add tests for GPRs (#25) (@stelmo)
- Biomass tests (#28) (@stelmo)
- move Vincent to the correct spot :] (#29) (@exaexa)
- Add network tests (#30) (@stelmo)
- turn off tests against julia-nightly (#31) (@exaexa)
- Add reaction annotation tests (#33) (@vm-vh)
- Reaction information tests (#34) (@stelmo)
- CompatHelper: add new compat entry for PeriodicTable at version 1, (keep existing compat) (#35) (@github-actions[bot])
- improve the no-op report from autoformatter (#36) (@exaexa)
- Add memote test suite (#37) (@stelmo)
- frog modularization & testing (#43) (@exaexa)
- Reorganize the memote tests (#44) (@stelmo)
- add tagbot action (#45) (@exaexa)
- add julia compat (#46) (@exaexa)