systems_biology_translators merge requestshttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests2021-07-26T10:45:21+02:00https://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/2Update xgmml/xgmml_to_gpml.R2021-07-26T10:45:21+02:00Marek OstaszewskiUpdate xgmml/xgmml_to_gpml.Rhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/3Update xgmml_to_gpml.R2021-07-26T10:53:14+02:00Marek OstaszewskiUpdate xgmml_to_gpml.Rhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/4Devrim update2021-10-29T15:42:33+02:00Devrim GunyelDevrim updatehttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/5create_test_instance updated2021-10-29T16:28:32+02:00Devrim Gunyelcreate_test_instance updatedhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/6corrected an error in the 'duplicate_ambiguous_effectors'2021-10-29T16:44:50+02:00Marek Ostaszewskicorrected an error in the 'duplicate_ambiguous_effectors'https://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/10applying converted pdmap submaps to hipathia2021-11-24T20:15:25+01:00Devrim Gunyelapplying converted pdmap submaps to hipathiapdmap converter script createdpdmap converter script createdhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/11cleaning, sif format, verbose output2021-11-24T21:30:47+01:00Marek Ostaszewskicleaning, sif format, verbose outputhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/15reorganisation, convert_from_sif with a wrapper function2022-01-28T17:12:57+01:00Marek Ostaszewskireorganisation, convert_from_sif with a wrapper functionhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/14convert_from_sif for production, working for the submaps. created...2022-01-28T17:14:11+01:00Devrim Gunyelconvert_from_sif for production, working for the submaps. created...convert_from_sif for production, working for the submaps. created [pathways]convert_from_sif.R for developing converter for pathways before production.
manually added bounds parametersconvert_from_sif for production, working for the submaps. created [pathways]convert_from_sif.R for developing converter for pathways before production.
manually added bounds parametershttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/16update the converter2022-01-28T17:28:33+01:00Marek Ostaszewskiupdate the converterhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/17Update convert_from_sif.R2022-01-28T17:29:53+01:00Marek OstaszewskiUpdate convert_from_sif.Rhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/18create graph functions modified, small updates on casq run2022-02-01T08:39:24+01:00Marek Ostaszewskicreate graph functions modified, small updates on casq runhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/19Indexing bug, now nodes rewired sequentially follwing while iterations2022-02-01T12:55:20+01:00Marek OstaszewskiIndexing bug, now nodes rewired sequentially follwing while iterationshttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/20Rename file, update errors when adding missing effectors, split into core/fun...2022-03-18T07:52:58+01:00Marek OstaszewskiRename file, update errors when adding missing effectors, split into core/functionshttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/21names in labels/tooltips2022-04-04T14:28:17+02:00Marek Ostaszewskinames in labels/tooltipshttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/22remove nonprintables and improve read2022-04-04T14:50:59+02:00Marek Ostaszewskiremove nonprintables and improve readhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/23read/write formats harmonised2022-04-05T16:39:41+02:00Marek Ostaszewskiread/write formats harmonisedhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/24NaviCell note processing2022-04-29T09:56:48+02:00Marek OstaszewskiNaviCell note processinghttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/25updated conversion: handle non-graphical nodes and use recent header specific...2023-01-19T13:17:27+01:00Marek Ostaszewskiupdated conversion: handle non-graphical nodes and use recent header specificationhttps://gitlab.lcsb.uni.lu/marek.ostaszewski/systems_biology_translators/-/merge_requests/26Bh232023-11-02T09:06:46+01:00Marek OstaszewskiBh23