diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParserTest.java index dee4b6235dda4be05d54866c2819fef256440109..188e2ba612de5528cd8e9a2056da38df2cd26a02 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParserTest.java @@ -29,7 +29,7 @@ public class ReactomeBlackBoxEventParserTest extends ReactomeTestFunctions { } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/blackBoxEvent.xml"); ReactomeBlackBoxEvent res = parser.parseObject(document.getChildNodes().item(0)); @@ -58,12 +58,12 @@ public class ReactomeBlackBoxEventParserTest extends ReactomeTestFunctions { assertEquals("Caspase-8 processing ", res.getNames().get(0)); } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/blackBoxEvent.xml"); ReactomeBlackBoxEvent res = parser.parseObject(document.getChildNodes().item(0)); @@ -87,7 +87,7 @@ public class ReactomeBlackBoxEventParserTest extends ReactomeTestFunctions { } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParserTest.java index 9e19d67273ec0eda25173da93d2b2cb1429b9348..b2cd3015e8f78f61fa14ece5682b07b0d1daee0b 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParserTest.java @@ -28,7 +28,7 @@ public class ReactomeCandidateSetParserTest extends ReactomeTestFunctions{ } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/candidateSet.xml"); ReactomeCandidateSet res = parser.parseObject(document.getChildNodes().item(0)); @@ -49,12 +49,12 @@ public class ReactomeCandidateSetParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/candidateSet.xml"); ReactomeCandidateSet res = parser.parseObject(document.getChildNodes().item(0)); @@ -72,7 +72,7 @@ public class ReactomeCandidateSetParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParserTest.java index 03913bc314088cf745deb121c011ccdab403b79c..e4d80756f63b292174bc44491437dadc44d2c471 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParserTest.java @@ -28,7 +28,7 @@ public class ReactomeCatalystActivityParserTest extends ReactomeTestFunctions{ } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/catalystActivity.xml"); ReactomeCatalystActivity res = parser.parseObject(document.getChildNodes().item(0)); @@ -37,12 +37,12 @@ public class ReactomeCatalystActivityParserTest extends ReactomeTestFunctions{ assertEquals((Integer)162843,res.getPhysicalEntity().getDbId()); } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/catalystActivity.xml"); ReactomeCatalystActivity res = parser.parseObject(document.getChildNodes().item(0)); @@ -54,7 +54,7 @@ public class ReactomeCatalystActivityParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParserTest.java index a0c0087478b1e582846e950402f506bac36d4e77..a8923e80b322a0c87bc9019fd30a97f1bc251606 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParserTest.java @@ -29,7 +29,7 @@ public class ReactomeDefinedSetParserTest extends ReactomeTestFunctions { } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/definedSet.xml"); ReactomeDefinedSet res = parser.parseObject(document.getChildNodes().item(0)); @@ -49,12 +49,12 @@ public class ReactomeDefinedSetParserTest extends ReactomeTestFunctions { } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/definedSet.xml"); ReactomeDefinedSet res = parser.parseObject(document.getChildNodes().item(0)); @@ -71,7 +71,7 @@ public class ReactomeDefinedSetParserTest extends ReactomeTestFunctions { } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeGenomeEncodedEntityParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeGenomeEncodedEntityParserTest.java index 5c914801dec205efc94031161938ea28a1d4aae2..97b012230bacc55ce10af3ab032a8ea53b13d128 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeGenomeEncodedEntityParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeGenomeEncodedEntityParserTest.java @@ -29,7 +29,7 @@ public class ReactomeGenomeEncodedEntityParserTest extends ReactomeTestFunctions } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/genomeEncodedEntity.xml"); ReactomeGenomeEncodedEntity res = parser.parseObject(document.getChildNodes().item(0)); @@ -43,12 +43,12 @@ public class ReactomeGenomeEncodedEntityParserTest extends ReactomeTestFunctions assertEquals("unidentified caspase acting on ZO-2",res.getNames().get(0)); } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/genomeEncodedEntity.xml"); ReactomeGenomeEncodedEntity res = parser.parseObject(document.getChildNodes().item(0)); @@ -62,7 +62,7 @@ public class ReactomeGenomeEncodedEntityParserTest extends ReactomeTestFunctions } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParserTest.java index 04731d17e018e6bb1c48594e9f91f929aef6be6a..befdce09749203818e9221ed60b9b69ad69bd1f9 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParserTest.java @@ -29,7 +29,7 @@ public class ReactomeOtherEntityParserTest extends ReactomeTestFunctions{ } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/otherEntity.xml"); ReactomeOtherEntity res = parser.parseObject(document.getChildNodes().item(0)); @@ -45,12 +45,12 @@ public class ReactomeOtherEntityParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/otherEntity.xml"); ReactomeOtherEntity res = parser.parseObject(document.getChildNodes().item(0)); @@ -64,7 +64,7 @@ public class ReactomeOtherEntityParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParserTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParserTest.java index 4a2ba2564a742990635296963e0731898c7f93b1..3342858e30ffc049a5420347ba819931fa2d7ef3 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParserTest.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParserTest.java @@ -28,7 +28,7 @@ public class ReactomePathwayParserTest extends ReactomeTestFunctions{ } @Test - public void testParseObject() { + public void testParseObject() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/pathway.xml"); ReactomePathway res = parser.parseObject(document.getChildNodes().item(0)); @@ -50,7 +50,7 @@ public class ReactomePathwayParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } } @@ -65,7 +65,7 @@ public class ReactomePathwayParserTest extends ReactomeTestFunctions{ } @Test - public void testUpdateObjectFromDb() { + public void testUpdateObjectFromDb() throws Exception { try { Document document = getXmlDocumentFromFile("testFiles/reactome/pathway.xml"); ReactomePathway res = parser.parseObject(document.getChildNodes().item(0)); @@ -83,7 +83,7 @@ public class ReactomePathwayParserTest extends ReactomeTestFunctions{ } catch (Exception e) { e.printStackTrace(); - fail("Unknown exception"); + throw e; } }