From 1015d8b7d277115ea836f7eade2a03998be25a7e Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Thu, 6 Sep 2018 18:20:30 +0200
Subject: [PATCH] support for vmh miriam types
---
CHANGELOG | 5 ++++
.../lcsb/mapviewer/model/map/MiriamType.java | 23 ++++++++++++++++++-
2 files changed, 27 insertions(+), 1 deletion(-)
diff --git a/CHANGELOG b/CHANGELOG
index ea66d7c7d9..cd93b2a0ad 100644
--- a/CHANGELOG
+++ b/CHANGELOG
@@ -1,3 +1,8 @@
+minerva (12.1.0~beta.0) experimental; urgency=medium
+ * Small improvement: miriam support for VMH reaction and VMH metabolite
+
+ -- Piotr Gawron <piotr.gawron@uni.lu> Wed, 05 Sep 2018 17:00:00 +0200
+
minerva (12.1.0~beta.0) experimental; urgency=medium
* Small improvement: option to remove additional overlays generated by custom
semantic zoom
diff --git a/model/src/main/java/lcsb/mapviewer/model/map/MiriamType.java b/model/src/main/java/lcsb/mapviewer/model/map/MiriamType.java
index bbb1df775f..d5ef085177 100644
--- a/model/src/main/java/lcsb/mapviewer/model/map/MiriamType.java
+++ b/model/src/main/java/lcsb/mapviewer/model/map/MiriamType.java
@@ -464,6 +464,22 @@ public enum MiriamType {
new String[] {}, //
new Class<?>[] {}, null),
+ /**
+ * VMH reaction
+ */
+ VMH_REACTION("VMH reaction", //
+ "http://vmh.uni.lu/", //
+ new String[] { "urn:miriam:vmhreaction", "http://identifiers.org/vmhreaction/" }, //
+ new Class<?>[] { Reaction.class }, null),
+
+ /**
+ * VMH reaction
+ */
+ VMH_METABOLITE("VMH reaction", //
+ "http://vmh.uni.lu/", //
+ new String[] { "urn:miriam:vmhmetabolite", "http://identifiers.org/vmhmetabolite/" }, //
+ new Class<?>[] { Chemical.class }, null),
+
/**
* Wikidata: https://www.wikidata.org/.
*/
@@ -710,7 +726,7 @@ public enum MiriamType {
* @return {@link MiriamData} from miriam uri
*/
public static MiriamData getMiriamByUri(String miriamUri) {
- // this hack is due to CellDesigner issue (CellDesigner incorectly handle
+ // this hack is due to CellDesigner issue (CellDesigner incorrectly handle
// with identifiers that have ":" inside resource ":" inside resource with
// "%3A" and also the last ":"
miriamUri = miriamUri.replace("%3A", ":");
@@ -725,6 +741,11 @@ public enum MiriamType {
foundType = type;
foundUri = uri;
}
+ } else if (miriamUri.startsWith(uri) && uri.endsWith("/")) {
+ if (uri.length() > foundUri.length()) {
+ foundType = type;
+ foundUri = uri;
+ }
}
}
}
--
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