From 1e4368cc4ec09e0890848a86b8b3e2ee4df5faa4 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Fri, 30 Jun 2017 12:11:08 +0200
Subject: [PATCH] reactome api url changed
---
.../src/main/java/lcsb/mapviewer/reactome/package-info.java | 2 +-
.../lcsb/mapviewer/reactome/utils/ReactomeConnector.java | 4 ++--
.../reactome/xml/ReactomeAbstractModifiedResidueParser.java | 6 +++---
.../mapviewer/reactome/xml/ReactomeAffiliationParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeBlackBoxEventParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeBookParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeCandidateSetParser.java | 2 +-
.../reactome/xml/ReactomeCatalystActivityParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeCellTypeParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeCompartmentParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeComplexParser.java | 2 +-
.../reactome/xml/ReactomeConcurrentEventSetParser.java | 2 +-
.../reactome/xml/ReactomeDatabaseIdentifierParser.java | 2 +-
.../reactome/xml/ReactomeDatabaseObjectParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeDefinedSetParser.java | 2 +-
.../reactome/xml/ReactomeDepolymerisationParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeDiseaseParser.java | 2 +-
.../reactome/xml/ReactomeEntityCompartmentParser.java | 2 +-
.../reactome/xml/ReactomeEntityFunctionalStatusParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeEntitySetParser.java | 2 +-
.../xml/ReactomeEntityWithAccessionedSequenceParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeEventParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeEvidenceTypeParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeFigureParser.java | 2 +-
.../xml/ReactomeFragmentDeletionModificationParser.java | 2 +-
.../xml/ReactomeFragmentInsertionModificationParser.java | 2 +-
.../xml/ReactomeFragmentReplacedModificationParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeFrontPageParser.java | 2 +-
.../reactome/xml/ReactomeFunctionalStatusParser.java | 2 +-
.../reactome/xml/ReactomeFunctionalStatusTypeParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeGenericDomainParser.java | 2 +-
.../reactome/xml/ReactomeGoBiologicalProcessParser.java | 2 +-
.../reactome/xml/ReactomeGoCellularComponentParser.java | 2 +-
.../reactome/xml/ReactomeGoMolecularFunctionParser.java | 2 +-
.../reactome/xml/ReactomeGroupModifiedResidueParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeInstanceEditParser.java | 2 +-
.../xml/ReactomeInterChainCrosslinkedResidueParser.java | 2 +-
.../xml/ReactomeIntraChainCrosslinkedResidueParser.java | 2 +-
.../reactome/xml/ReactomeLiteratureReferenceParser.java | 2 +-
.../reactome/xml/ReactomeModifiedResidueParser.java | 2 +-
.../reactome/xml/ReactomeNegativeRegulationParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeOpenSetParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeOtherEntityParser.java | 2 +-
.../reactome/xml/ReactomePathwayCoordinatesParser.java | 2 +-
.../reactome/xml/ReactomePathwayDiagramParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomePathwayParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomePathwayVertexParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomePersonParser.java | 2 +-
.../reactome/xml/ReactomePhysicalEntityParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomePolymerParser.java | 2 +-
.../reactome/xml/ReactomePolymerisationParser.java | 2 +-
.../reactome/xml/ReactomePositiveRegulationParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomePsiModParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomePublicationParser.java | 2 +-
.../reactome/xml/ReactomeReactionCoordinatesParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeReactionParser.java | 2 +-
.../reactome/xml/ReactomeReactionVertexParser.java | 2 +-
.../reactome/xml/ReactomeReactionlikeEventParser.java | 2 +-
.../reactome/xml/ReactomeReferenceDNASequenceParser.java | 2 +-
.../reactome/xml/ReactomeReferenceDatabaseParser.java | 2 +-
.../reactome/xml/ReactomeReferenceEntityParser.java | 2 +-
.../reactome/xml/ReactomeReferenceGeneProductParser.java | 2 +-
.../reactome/xml/ReactomeReferenceGroupParser.java | 2 +-
.../reactome/xml/ReactomeReferenceIsoformParser.java | 2 +-
.../reactome/xml/ReactomeReferenceMoleculeParser.java | 2 +-
.../reactome/xml/ReactomeReferenceRNASequenceParser.java | 2 +-
.../reactome/xml/ReactomeReferenceSequenceParser.java | 2 +-
.../reactome/xml/ReactomeRegulationTypeParser.java | 2 +-
.../reactome/xml/ReactomeReplacedResidueParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeRequirementParser.java | 2 +-
.../reactome/xml/ReactomeSequenceDomainParser.java | 2 +-
.../reactome/xml/ReactomeSequenceOntologyParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeSimpleEntityParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeSpeciesParser.java | 2 +-
.../reactome/xml/ReactomeStableIdentifierParser.java | 2 +-
.../mapviewer/reactome/xml/ReactomeSummationParser.java | 2 +-
.../lcsb/mapviewer/reactome/xml/ReactomeTaxonParser.java | 2 +-
.../java/lcsb/mapviewer/reactome/xml/ReactomeURLParser.java | 2 +-
.../main/java/lcsb/mapviewer/reactome/xml/package-info.java | 2 +-
.../mapviewer/reactome/utils/ReactomeConnectorTest.java | 2 +-
80 files changed, 83 insertions(+), 83 deletions(-)
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/package-info.java b/reactome/src/main/java/lcsb/mapviewer/reactome/package-info.java
index 55b7a2fe06..98ccb86955 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/package-info.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/package-info.java
@@ -2,7 +2,7 @@
* This package provides interface to access data in <a
* href="http://www.reactome.org/">Reactome</a> database. Information from this
* database are retrieved using <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* > Reactome RESTful API</a>. Reactome model was implemented in
* {@link lcsb.mapviewer.reactome.model model} subpackage. By design all
* reactome objects inherit from
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/utils/ReactomeConnector.java b/reactome/src/main/java/lcsb/mapviewer/reactome/utils/ReactomeConnector.java
index 6f01e9d5a6..3c0984bea4 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/utils/ReactomeConnector.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/utils/ReactomeConnector.java
@@ -136,7 +136,7 @@ public class ReactomeConnector extends CachableInterface implements DataSourceUp
/**
* Url used for accessing Reactome RestFULL API.
*/
- private static final String REACTOME_URL = "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/RESTfulWS/";
+ private static final String REACTOME_URL = "http://reactome.org/ReactomeRESTfulAPI/RESTfulWS/";
@Override
public List<ReactomePhysicalEntity> getEntitiesForName(String name) throws IOException {
@@ -752,7 +752,7 @@ public class ReactomeConnector extends CachableInterface implements DataSourceUp
@Override
public ExternalServiceStatus getServiceStatus() {
ExternalServiceStatus status = new ExternalServiceStatus(
- "Reactome RESTful API", "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html");
+ "Reactome RESTful API", "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html");
GeneralCacheInterface cacheCopy = getCache();
this.setCache(null);
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAbstractModifiedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAbstractModifiedResidueParser.java
index 04bc387dcf..11cc1de3df 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAbstractModifiedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAbstractModifiedResidueParser.java
@@ -4,9 +4,9 @@ import lcsb.mapviewer.reactome.model.ReactomeAbstractModifiedResidue;
import lcsb.mapviewer.reactome.xml.columnParser.AbstractModifiedResidueColumnParser;
/**
- * Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
- * >Reactome API</a> for <a href=
+ * Parser for reactome xml retrieved from
+ * <a href= "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html" >
+ * Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=AbstractModifiedResidue"
* >AbstractModifiedResidue</a> object.
*
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAffiliationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAffiliationParser.java
index 51b689991c..12568ee661 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAffiliationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeAffiliationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.AffiliationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Affiliation"
* >Affiliation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParser.java
index 150cbb219c..4bef2d69d5 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBlackBoxEventParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.BlackBoxEventColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=BlackBoxEvent"
* >BlackBoxEvent</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBookParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBookParser.java
index 6b41e12618..55f97847d2 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBookParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeBookParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.BookColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Book"
* >Book</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParser.java
index a1a5f5f09f..6502ddac48 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCandidateSetParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.CandidateSetColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=CandidateSet"
* >CandidateSet</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParser.java
index 42c5be11f7..c61305def0 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCatalystActivityParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.CatalystActivityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=CatalystActivity"
* >CatalystActivity</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCellTypeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCellTypeParser.java
index d6f94a33e0..80e2b07fdf 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCellTypeParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCellTypeParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.CellTypeColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=CellType"
* >CellType</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCompartmentParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCompartmentParser.java
index 6ce2f7f5c5..4e404f94a2 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCompartmentParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeCompartmentParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.CompartmentColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Compartment"
* >Compartment</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeComplexParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeComplexParser.java
index f266625a0c..686ff0b263 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeComplexParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeComplexParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ComplexColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Complex"
* >Complex</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeConcurrentEventSetParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeConcurrentEventSetParser.java
index 0334bc396a..3999fe8fb4 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeConcurrentEventSetParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeConcurrentEventSetParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ConcurrentEventSetColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ConcurrentEventSet"
* >ConcurrentEventSet</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseIdentifierParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseIdentifierParser.java
index 8ca36d620d..267aa457f4 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseIdentifierParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseIdentifierParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.DatabaseIdentifierColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=DatabaseIdentifier"
* >DatabaseIdentifier</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseObjectParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseObjectParser.java
index 01040414ad..b9aee00586 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseObjectParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDatabaseObjectParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.DatabaseObjectColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=DatabaseObject"
* >DatabaseObject</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParser.java
index d757bfd846..845e85453b 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDefinedSetParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.DefinedSetColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=DefinedSet"
* >DefinedSet</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDepolymerisationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDepolymerisationParser.java
index a7696cfcf3..62ce3555b2 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDepolymerisationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDepolymerisationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.DepolymerisationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Depolymerisation"
* >Depolymerisation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDiseaseParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDiseaseParser.java
index 9ce0a5a0a5..aa5fcbbb2e 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDiseaseParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeDiseaseParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.DiseaseColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Disease"
* >Disease</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityCompartmentParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityCompartmentParser.java
index 8196e34b93..ddb0c348f3 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityCompartmentParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityCompartmentParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EntityCompartmentColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=EntityCompartment"
* >EntityCompartment</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityFunctionalStatusParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityFunctionalStatusParser.java
index 31f6c6ab12..bb7e5b12e1 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityFunctionalStatusParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityFunctionalStatusParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EntityFunctionalStatusColumnPars
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=EntityFunctionalStatus"
* >EntityFunctionalStatus</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntitySetParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntitySetParser.java
index d1bd3026be..f64466ea7d 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntitySetParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntitySetParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EntitySetColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=EntitySet"
* >EntitySet</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityWithAccessionedSequenceParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityWithAccessionedSequenceParser.java
index 8f263a65be..5bde95aff4 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityWithAccessionedSequenceParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEntityWithAccessionedSequenceParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EntityWithAccessionedSequenceCol
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=EntityWithAccessionedSequence"
* >EntityWithAccessionedSequence</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEventParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEventParser.java
index 980f663d03..0f35448ec0 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEventParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEventParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EventColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Event"
* >Event</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEvidenceTypeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEvidenceTypeParser.java
index bbb9389656..005faa81b1 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEvidenceTypeParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeEvidenceTypeParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.EvidenceTypeColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=EvidenceType"
* >EvidenceType</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFigureParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFigureParser.java
index 08bf87d4ec..193aae734d 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFigureParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFigureParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FigureColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Figure"
* >Figure</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentDeletionModificationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentDeletionModificationParser.java
index 1de4d5e074..f80f2803cc 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentDeletionModificationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentDeletionModificationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FragmentDeletionModificationColu
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FragmentDeletionModification"
* >FragmentDeletionModification</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentInsertionModificationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentInsertionModificationParser.java
index b2ad033943..8df7feda7a 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentInsertionModificationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentInsertionModificationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FragmentInsertionModificationCol
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FragmentInsertionModification"
* >FragmentInsertionModification</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentReplacedModificationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentReplacedModificationParser.java
index c7bbc93b57..831bcc6719 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentReplacedModificationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFragmentReplacedModificationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FragmentReplacedModificationColu
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FragmentReplacedModification"
* >FragmentReplacedModification</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFrontPageParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFrontPageParser.java
index 3c4e4b2723..0e5b363a76 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFrontPageParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFrontPageParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FrontPageColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FrontPage"
* >FrontPage</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusParser.java
index 42fb376632..8c880c3198 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FunctionalStatusColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FunctionalStatus"
* >FunctionalStatus</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusTypeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusTypeParser.java
index dbbdc37151..e99e063e83 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusTypeParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeFunctionalStatusTypeParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.FunctionalStatusTypeColumnParser
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=FunctionalStatusType"
* >FunctionalStatusType</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGenericDomainParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGenericDomainParser.java
index f7d70c1090..32464b1f41 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGenericDomainParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGenericDomainParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GenericDomainColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GenericDomain"
* >GenericDomain</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoBiologicalProcessParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoBiologicalProcessParser.java
index e1949ca49c..df4bcc641f 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoBiologicalProcessParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoBiologicalProcessParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GoBiologicalProcessColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GO_BiologicalProcess"
* >GoBiologicalProcess</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoCellularComponentParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoCellularComponentParser.java
index e3d6fe8599..b25db047e4 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoCellularComponentParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoCellularComponentParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GoCellularComponentColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GO_CellularComponent"
* >GoCellularComponent</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoMolecularFunctionParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoMolecularFunctionParser.java
index 044de56f2c..c7bc06099c 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoMolecularFunctionParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGoMolecularFunctionParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GoMolecularFunctionColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GO_MolecularFunction"
* >GoMolecularFunction</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGroupModifiedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGroupModifiedResidueParser.java
index 8caa9c4de8..21346fbe01 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGroupModifiedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeGroupModifiedResidueParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.GroupModifiedResidueColumnParser
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=GroupModifiedResidue"
* >GroupModifiedResidue</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInstanceEditParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInstanceEditParser.java
index 54ba2cc979..d44400f760 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInstanceEditParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInstanceEditParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.InstanceEditColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=InstanceEdit"
* >InstanceEdit</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInterChainCrosslinkedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInterChainCrosslinkedResidueParser.java
index 8119ba6574..f409361c46 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInterChainCrosslinkedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeInterChainCrosslinkedResidueParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.InterChainCrosslinkedResidueColu
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=InterChainCrosslinkedResidue"
* >InterChainCrosslinkedResidue</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeIntraChainCrosslinkedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeIntraChainCrosslinkedResidueParser.java
index f4a12a7069..7917c35a89 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeIntraChainCrosslinkedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeIntraChainCrosslinkedResidueParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.IntraChainCrosslinkedResidueColu
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=IntraChainCrosslinkedResidue"
* >IntraChainCrosslinkedResidue</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeLiteratureReferenceParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeLiteratureReferenceParser.java
index 8664b210c0..7eb163140d 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeLiteratureReferenceParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeLiteratureReferenceParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.LiteratureReferenceColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=LiteratureReference"
* >LiteratureReference</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeModifiedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeModifiedResidueParser.java
index 4f0cc92357..14e4e06949 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeModifiedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeModifiedResidueParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ModifiedResidueColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=NegativeRegulation"
* >NegativeRegulation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeNegativeRegulationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeNegativeRegulationParser.java
index 3b20ca7ec2..2fb0b89165 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeNegativeRegulationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeNegativeRegulationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.NegativeRegulationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=NegativeRegulation"
* >NegativeRegulation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOpenSetParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOpenSetParser.java
index 558be58311..c026b34eb3 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOpenSetParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOpenSetParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.OpenSetColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=OpenSet"
* >OpenSet</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParser.java
index d5b971e0fe..85546fd9dd 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeOtherEntityParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.OtherEntityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=OtherEntity"
* >OtherEntity</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayCoordinatesParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayCoordinatesParser.java
index 5db28f0c52..f00c4344d5 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayCoordinatesParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayCoordinatesParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PathwayCoordinatesColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PathwayCoordinates"
* >PathwayCoordinates</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayDiagramParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayDiagramParser.java
index 92d40a137f..b569cbacf2 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayDiagramParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayDiagramParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PathwayDiagramColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PathwayDiagram"
* >PathwayDiagram</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParser.java
index 225f5ffff8..9c25d551a3 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PathwayColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Pathway"
* >Pathway</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayVertexParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayVertexParser.java
index 15406f18f1..d44c862ecd 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayVertexParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePathwayVertexParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PathwayVertexColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PathwayVertex"
* >PathwayVertex</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePersonParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePersonParser.java
index a96e6d7f17..8d047fd29e 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePersonParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePersonParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PersonColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Person"
* >Person</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePhysicalEntityParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePhysicalEntityParser.java
index de892b7ed0..e209e99f04 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePhysicalEntityParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePhysicalEntityParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PhysicalEntityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PhysicalEntity"
* >PhysicalEntity</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerParser.java
index daa573fde1..9684ddfc34 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PolymerColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Polymer"
* >Polymer</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerisationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerisationParser.java
index 10dec3ee76..7cad3eec46 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerisationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePolymerisationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PolymerisationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Polymerisation"
* >Polymerisation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePositiveRegulationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePositiveRegulationParser.java
index fa740e6e49..e9af8e8d93 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePositiveRegulationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePositiveRegulationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PositiveRegulationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PositiveRegulation"
* >PositiveRegulation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePsiModParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePsiModParser.java
index 80532b55f9..42774459de 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePsiModParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePsiModParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PsiModColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=PsiMod"
* >PsiMod</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePublicationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePublicationParser.java
index a8b47f1222..23765fd91c 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePublicationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomePublicationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.PublicationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Publication"
* >Publication</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionCoordinatesParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionCoordinatesParser.java
index d8b968036c..c6082bbd1d 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionCoordinatesParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionCoordinatesParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReactionCoordinatesColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReactionCoordinates"
* >ReactionCoordinates</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionParser.java
index 6413b0d047..85e790b7e7 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReactionColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Reaction"
* >Reaction</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionVertexParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionVertexParser.java
index 6a7dfa9bad..d3d9f54dcb 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionVertexParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionVertexParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReactionVertexColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReactionVertex"
* >ReactionVertex</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionlikeEventParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionlikeEventParser.java
index 59ffd855de..387d4e0be2 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionlikeEventParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReactionlikeEventParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReactionlikeEventColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReactionlikeEvent"
* >ReactionlikeEvent</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDNASequenceParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDNASequenceParser.java
index 8fcbf4b96d..d71831964f 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDNASequenceParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDNASequenceParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceDNASequenceColumnParser
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceDNASequence"
* >ReferenceDNASequence</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDatabaseParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDatabaseParser.java
index a5bef64b09..2bcd564af5 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDatabaseParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceDatabaseParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceDatabaseColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceDatabase"
* >ReferenceDatabase</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceEntityParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceEntityParser.java
index 20acd6bd8d..1367865111 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceEntityParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceEntityParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceEntityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceEntity"
* >ReferenceEntity</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGeneProductParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGeneProductParser.java
index b60a6611c3..7ef303753f 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGeneProductParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGeneProductParser.java
@@ -6,7 +6,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceGeneProductColumnParser
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceGeneProduct"
* >ReferenceGeneProduct</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGroupParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGroupParser.java
index ee2676171c..fa5f8a91a8 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGroupParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceGroupParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceGroupColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceGroup"
* >ReferenceGroup</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceIsoformParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceIsoformParser.java
index b3d5f78175..598a9dd548 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceIsoformParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceIsoformParser.java
@@ -6,7 +6,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceIsoproductColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceIsoform"
* >ReferenceIsoform</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceMoleculeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceMoleculeParser.java
index 5ab67784b3..99f6fb05cd 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceMoleculeParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceMoleculeParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceMoleculeColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceMolecule"
* >ReferenceMolecule</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceRNASequenceParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceRNASequenceParser.java
index 0f4e29ecf8..cc014ab2ed 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceRNASequenceParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceRNASequenceParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceRNASequenceColumnParser
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceRNASequence"
* >ReferenceRNASequence</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceSequenceParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceSequenceParser.java
index 0e9d3281e7..e555d8c7ec 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceSequenceParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReferenceSequenceParser.java
@@ -6,7 +6,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReferenceSequenceColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReferenceSequence"
* >ReferenceSequence</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java
index 6e36073ca9..446afe2e89 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.RegulationTypeColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=RegulationType"
* >RegulationType</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReplacedResidueParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReplacedResidueParser.java
index e8b118a272..4d7cfb7f46 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReplacedResidueParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeReplacedResidueParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.ReplacedResidueColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=ReplacedResidue"
* >ReplacedResidue</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRequirementParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRequirementParser.java
index 3ecd3bbf2b..a1f9bc17c6 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRequirementParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRequirementParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.RequirementColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Requirement"
* >Requirement</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceDomainParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceDomainParser.java
index 75494b542e..34deb0f2a9 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceDomainParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceDomainParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.SequenceDomainColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=SequenceDomain">
* SequenceDomain</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceOntologyParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceOntologyParser.java
index 2d3661cc7b..06f2f7d02a 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceOntologyParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSequenceOntologyParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.SequenceOntologyColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=SequenceOntology"
* >SequenceOntology</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSimpleEntityParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSimpleEntityParser.java
index b33c154711..8e1e0094ee 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSimpleEntityParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSimpleEntityParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.SimpleEntityColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=SimpleEntity"
* >SimpleEntity</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSpeciesParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSpeciesParser.java
index 0346361378..f936a8d3d9 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSpeciesParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSpeciesParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.SpeciesColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Species"
* >Species</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeStableIdentifierParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeStableIdentifierParser.java
index ae43a4e509..9fee035680 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeStableIdentifierParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeStableIdentifierParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.StableIdentifierColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=StableIdentifier"
* >StableIdentifier</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSummationParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSummationParser.java
index 48d94528b1..b1926e2b6a 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSummationParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeSummationParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.SummationColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Summation"
* >Summation</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeTaxonParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeTaxonParser.java
index 9bcd3ed85a..3f4fca0c5e 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeTaxonParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeTaxonParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.TaxonColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=Taxon"
* >Taxon</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeURLParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeURLParser.java
index b9cbae25ef..9aafded964 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeURLParser.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeURLParser.java
@@ -5,7 +5,7 @@ import lcsb.mapviewer.reactome.xml.columnParser.URLColumnParser;
/**
* Parser for reactome xml retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a> for <a href=
* "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=URL"
* >URL</a> object.
diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/package-info.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/package-info.java
index f370b3576c..9f8103390a 100644
--- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/package-info.java
+++ b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/package-info.java
@@ -1,6 +1,6 @@
/**
* Provides parsers for xml data retrieved from <a href=
- * "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
+ * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html"
* >Reactome API</a>.
*/
package lcsb.mapviewer.reactome.xml;
diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/utils/ReactomeConnectorTest.java b/reactome/src/test/java/lcsb/mapviewer/reactome/utils/ReactomeConnectorTest.java
index 1c8e5b6bfa..65aed9ba09 100644
--- a/reactome/src/test/java/lcsb/mapviewer/reactome/utils/ReactomeConnectorTest.java
+++ b/reactome/src/test/java/lcsb/mapviewer/reactome/utils/ReactomeConnectorTest.java
@@ -169,7 +169,7 @@ public class ReactomeConnectorTest extends ReactomeTestFunctions {
@Test(timeout = 15000)
public void testCachableInterfaceByParams() throws Exception {
- String url = "http://reactomews.oicr.on.ca:8080/ReactomeRESTfulAPI/RESTfulWS/listByQuery/DatabaseObjects";
+ String url = "http://reactome.org/ReactomeRESTfulAPI/RESTfulWS/listByQuery/DatabaseObjects";
String query = "identifier=2562550\n" + url;
String newRes = "hello";
try {
--
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