diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0aca2c3fe90eb23ea0bd455ed7806b541973a5f8..68cb23770a3f5eb413f289d9574344fca7a5311a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -12,6 +12,7 @@ variables:
test_frontend:
stage: test
+ coverage: '/Statements[:\ ]+(\d+.\d+)\%/'
script:
- cd frontend-js
- npm install
@@ -20,6 +21,7 @@ test_frontend:
test_backend 1 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
#xvfb is for X11 connection used by some parts of the java code: https://stackoverflow.com/a/47575851/1127920
- apt-get update
@@ -29,129 +31,158 @@ test_backend 1 15:
- mvn -DskipTests=true clean install -pl commons -am
- mvn test -pl commons
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' commons/target/site/jacoco/jacoco.csv
test_backend 2 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl annotation -am
- mvn test -pl annotation
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' annotation/target/site/jacoco/jacoco.csv
test_backend 3 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl CellDesigner-plugin -am
- mvn test -pl CellDesigner-plugin
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' CellDesigner-plugin/target/site/jacoco/jacoco.csv
test_backend 4 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl converter -am
- mvn test -pl converter
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' converter/target/site/jacoco/jacoco.csv
test_backend 5 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl converter-graphics -am
- mvn test -pl converter-graphics
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' converter-graphics/target/site/jacoco/jacoco.csv
test_backend 6 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl converter-CellDesigner -am
- mvn test -pl converter-CellDesigner
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' converter-CellDesigner/target/site/jacoco/jacoco.csv
test_backend 7 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl converter-SBGNML -am
- mvn test -pl converter-SBGNML
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' converter-SBGNML/target/site/jacoco/jacoco.csv
test_backend 8 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl converter-sbml -am
- mvn test -pl converter-sbml
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' converter-sbml/target/site/jacoco/jacoco.csv
test_backend 9 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl model -am
- mvn test -pl model
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' model/target/site/jacoco/jacoco.csv
test_backend 10 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl model-command -am
- mvn test -pl model-command
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' model-command/target/site/jacoco/jacoco.csv
test_backend 11 15:
image: maven:3.6.0-jdk-8
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mvn -DskipTests=true clean install -pl pathvisio -am
- mvn test -pl pathvisio
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' pathvisio/target/site/jacoco/jacoco.csv
test_backend 12 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl persist -am
- mvn test -pl persist
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' persist/target/site/jacoco/jacoco.csv
test_backend 13 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl reactome -am
- mvn test -pl reactome
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' reactome/target/site/jacoco/jacoco.csv
test_backend 14 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl rest-api -am
- mvn test -pl rest-api
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' rest-api/target/site/jacoco/jacoco.csv
test_backend 15 15:
image: maven:3.6.0-jdk-8
services:
- postgres:9.6
stage: test
+ coverage: '/(\d+.\d+) \% covered/'
script:
- mkdir /etc/minerva/
- cp test-db-ci.properties /etc/minerva/db.properties
- mvn -DskipTests=true clean install -pl service -am
- mvn test -pl service
+ - awk -F"," '{ instructions += $4 + $5; covered += $5 } END { print covered, "/", instructions, "instructions covered"; print 100*covered/instructions,"% covered" }' service/target/site/jacoco/jacoco.csv
build_war:
image: maven:3.6.0-jdk-8
diff --git a/pom.xml b/pom.xml
index c6cbff9814714288b971db5f98a5802f5e44f3a7..a069d78f0f5c681b9a3d1822b1fe1561e32acf65 100644
--- a/pom.xml
+++ b/pom.xml
@@ -173,6 +173,25 @@
<surefire.rerunFailingTestsCount>4</surefire.rerunFailingTestsCount>
</configuration>
</plugin>
+ <plugin>
+ <groupId>org.jacoco</groupId>
+ <artifactId>jacoco-maven-plugin</artifactId>
+ <version>0.7.9</version>
+ <executions>
+ <execution>
+ <goals>
+ <goal>prepare-agent</goal>
+ </goals>
+ </execution>
+ <execution>
+ <id>generate-code-coverage-report</id>
+ <phase>test</phase>
+ <goals>
+ <goal>report</goal>
+ </goals>
+ </execution>
+ </executions>
+ </plugin>
</plugins>
</build>