From 42085912d3b16a9e84dc761a4e0dcdd187512e52 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Fri, 8 Sep 2017 22:21:14 +0200
Subject: [PATCH] formatting
---
frontend-js/src/main/js/GuiConnector.js | 55 +-
frontend-js/src/main/js/ServerConnector.js | 648 ++++++++++-----------
2 files changed, 352 insertions(+), 351 deletions(-)
diff --git a/frontend-js/src/main/js/GuiConnector.js b/frontend-js/src/main/js/GuiConnector.js
index 296b0bf84f..99f046913d 100644
--- a/frontend-js/src/main/js/GuiConnector.js
+++ b/frontend-js/src/main/js/GuiConnector.js
@@ -26,11 +26,11 @@ GuiConnector.yPos = 0;
* List of GET params passed via url.
*/
-GuiConnector.init = function() {
+GuiConnector.init = function () {
var self = this;
if (!String.prototype.endsWith) {
- String.prototype.endsWith = function(pattern) {
+ String.prototype.endsWith = function (pattern) {
var d = this.length - pattern.length;
return d >= 0 && this.lastIndexOf(pattern) === d;
};
@@ -41,7 +41,7 @@ GuiConnector.init = function() {
alert("This webpage works well with Chrome, Firefox and Safari.");
}
// bootstrap tab initialization
- $("ul.nav-tabs a").click(function(e) {
+ $("ul.nav-tabs a").click(function (e) {
e.preventDefault();
$(this).tab('show');
});
@@ -49,16 +49,17 @@ GuiConnector.init = function() {
self.getParams = [];
// find GuiConnector.getParams
- window.location.search.replace(/\??(?:([^=]+)=([^&]*)&?)/g, function() {
+ window.location.search.replace(/\??(?:([^=]+)=([^&]*)&?)/g, function () {
function decode(s) {
return decodeURIComponent(s.split("+").join(" "));
}
+
GuiConnector.getParams[decode(arguments[1])] = decode(arguments[2]);
});
// forser browser to update mouse coordinates whenever mouse move
- jQuery(document).ready(function() {
- $(document).mousemove(function(e) {
+ jQuery(document).ready(function () {
+ $(document).mousemove(function (e) {
GuiConnector.updateMouseCoordinates(e.pageX, e.pageY);
});
});
@@ -70,7 +71,7 @@ GuiConnector.init = function() {
self.addWindowResizeEvent(window.onresize);
}
- window.onresize = function() {
+ window.onresize = function () {
for (var i = 0; i < self._windowResizeEvents.length; i++) {
self._windowResizeEvents[i]();
}
@@ -78,18 +79,18 @@ GuiConnector.init = function() {
}
};
-GuiConnector.addWindowResizeEvent = function(handler) {
+GuiConnector.addWindowResizeEvent = function (handler) {
this._windowResizeEvents.push(handler);
};
/**
* Returns name of the file with LCSB logo.
- *
+ *
* @param bigLogo
* {@link Boolean} value determining if we want to have big logo or
* small one
*/
-GuiConnector.getLcsbLogoImg = function(bigLogo) {
+GuiConnector.getLcsbLogoImg = function (bigLogo) {
if (bigLogo) {
return 'lcsb_logo_mid.png';
} else {
@@ -101,26 +102,26 @@ GuiConnector.getLcsbLogoImg = function(bigLogo) {
* Returns name of the file with image that should be presented when we are
* wainting for data to be loaded.
*/
-GuiConnector.getLoadingImg = function() {
+GuiConnector.getLoadingImg = function () {
return "icons/ajax-loader.gif";
};
/**
* Returns home directory for images in the application.
*/
-GuiConnector.getImgPrefix = function() {
+GuiConnector.getImgPrefix = function () {
return "resources/images/";
};
/**
* Updates coordinates of the mouse in the browser.
*/
-GuiConnector.updateMouseCoordinates = function(x, y) {
+GuiConnector.updateMouseCoordinates = function (x, y) {
this.xPos = x;
this.yPos = y;
};
-GuiConnector.showProcessing = function(messageText) {
+GuiConnector.showProcessing = function (messageText) {
var self = GuiConnector;
if (self._processingDialog === undefined) {
self._processingDialog = document.createElement("div");
@@ -128,11 +129,11 @@ GuiConnector.showProcessing = function(messageText) {
self._processingDialog.appendChild(self._errorDialogContent);
document.body.appendChild(self._processingDialog);
$(self._processingDialog).dialog({
- modal : true,
- title : "PROCESSING",
- width : "150px",
- closeOnEscape : false,
- open : function(event, ui) {
+ modal: true,
+ title: "PROCESSING",
+ width: "150px",
+ closeOnEscape: false,
+ open: function (event, ui) {
$(".ui-dialog-titlebar-close", ui).hide();
},
});
@@ -141,8 +142,8 @@ GuiConnector.showProcessing = function(messageText) {
messageText = "PROCESSING";
}
var messageImg = Functions.createElement({
- type : "img",
- src : 'resources/images/icons/ajax-loader.gif',
+ type: "img",
+ src: 'resources/images/icons/ajax-loader.gif',
});
self._errorDialogContent.innerHTML = "";
self._errorDialogContent.style.textAlign = "center";
@@ -153,12 +154,12 @@ GuiConnector.showProcessing = function(messageText) {
$(self._processingDialog).dialog("open");
};
-GuiConnector.hideProcessing = function() {
+GuiConnector.hideProcessing = function () {
var self = GuiConnector;
$(self._processingDialog).dialog("close");
};
-GuiConnector.alert = function(error) {
+GuiConnector.alert = function (error) {
var self = GuiConnector;
logger.error(error);
if (self._errorDialog === undefined) {
@@ -167,11 +168,11 @@ GuiConnector.alert = function(error) {
self._errorDialog.appendChild(self._errorDialogContent);
document.body.appendChild(self._errorDialog);
$(self._errorDialog).dialog({
- classes : {
- "ui-dialog" : "ui-state-error"
+ classes: {
+ "ui-dialog": "ui-state-error"
},
- modal : true,
- title : "ERROR"
+ modal: true,
+ title: "ERROR"
}).siblings('.ui-dialog-titlebar').css("background", "red");
}
var message = error;
diff --git a/frontend-js/src/main/js/ServerConnector.js b/frontend-js/src/main/js/ServerConnector.js
index 0720a22019..ab73b954a2 100644
--- a/frontend-js/src/main/js/ServerConnector.js
+++ b/frontend-js/src/main/js/ServerConnector.js
@@ -45,13 +45,13 @@ ServerConnector.registerListenerType("onDataLoadStop");
ServerConnector._configurationParam = [];
-ServerConnector.getMinOverlayColorInt = function() {
+ServerConnector.getMinOverlayColorInt = function () {
var self = this;
var userColor;
- return self.getLoggedUser().then(function(user) {
+ return self.getLoggedUser().then(function (user) {
userColor = user.getMinColor();
return self.getConfigurationParam(ConfigurationType.MIN_COLOR_VAL);
- }).then(function(systemMinColor) {
+ }).then(function (systemMinColor) {
var color = userColor;
if (userColor === null || userColor === undefined || userColor === "") {
color = systemMinColor;
@@ -63,13 +63,13 @@ ServerConnector.getMinOverlayColorInt = function() {
});
};
-ServerConnector.getSimpleOverlayColorInt = function() {
+ServerConnector.getSimpleOverlayColorInt = function () {
var self = this;
var userColor;
- return self.getLoggedUser().then(function(user) {
+ return self.getLoggedUser().then(function (user) {
userColor = user.getSimpleColor();
return self.getConfigurationParam(ConfigurationType.SIMPLE_COLOR_VAL);
- }).then(function(systemSimpleColor) {
+ }).then(function (systemSimpleColor) {
var color = userColor;
if (userColor === null || userColor === undefined || userColor === "") {
color = systemSimpleColor;
@@ -81,13 +81,13 @@ ServerConnector.getSimpleOverlayColorInt = function() {
});
};
-ServerConnector.getMaxOverlayColorInt = function() {
+ServerConnector.getMaxOverlayColorInt = function () {
var self = this;
var userColor;
- return self.getLoggedUser().then(function(user) {
+ return self.getLoggedUser().then(function (user) {
userColor = user.getMaxColor();
return self.getConfigurationParam(ConfigurationType.MAX_COLOR_VAL);
- }).then(function(systemMaxColor) {
+ }).then(function (systemMaxColor) {
var color = userColor;
if (userColor === null || userColor === undefined || userColor === "") {
color = systemMaxColor;
@@ -99,7 +99,7 @@ ServerConnector.getMaxOverlayColorInt = function() {
});
};
-ServerConnector.readFile = function(url, description) {
+ServerConnector.readFile = function (url, description) {
var self = this;
if (self.getSessionData().getToken() === undefined) {
@@ -111,30 +111,30 @@ ServerConnector.readFile = function(url, description) {
description = url;
}
var content;
- return self.callListeners("onDataLoadStart", description).then(function() {
+ return self.callListeners("onDataLoadStart", description).then(function () {
return self._readFile(url);
- }).then(function(result) {
+ }).then(function (result) {
content = result;
return self.callListeners("onDataLoadStop", description);
- }, function(error) {
- return self.callListeners("onDataLoadStop", description).then(function() {
+ }, function (error) {
+ return self.callListeners("onDataLoadStop", description).then(function () {
return Promise.reject(error);
});
- }).then(function() {
+ }).then(function () {
return content;
});
};
-ServerConnector._readFile = function(url) {
- return new Promise(function(resolve, reject) {
- request.get(url, function(error, response, body) {
+ServerConnector._readFile = function (url) {
+ return new Promise(function (resolve, reject) {
+ request.get(url, function (error, response, body) {
if (error) {
reject(error);
} else if (response.statusCode !== 200) {
reject(new NetworkError(url + " rejected with status code: " + response.statusCode, {
- content : body,
- url : url,
- statusCode : response.statusCode
+ content: body,
+ url: url,
+ statusCode: response.statusCode
}));
} else {
resolve(body);
@@ -143,28 +143,28 @@ ServerConnector._readFile = function(url) {
});
};
-ServerConnector.sendPostRequest = function(url, params) {
+ServerConnector.sendPostRequest = function (url, params) {
var self = this;
if (self.getSessionData().getToken() === undefined) {
self.getSessionData().setLogin(undefined);
window.location.reload(false);
}
- return new Promise(function(resolve, reject) {
+ return new Promise(function (resolve, reject) {
request.post({
- url : url,
- form : params
- }, function(error, response, body) {
+ url: url,
+ form: params
+ }, function (error, response, body) {
if (error) {
reject(new NetworkError(error, {
- content : body,
- url : url
+ content: body,
+ url: url
}));
} else if (response.statusCode !== 200) {
reject(new NetworkError(url + " rejected with status code: " + response.statusCode, {
- content : body,
- url : url,
- statusCode : response.statusCode
+ content: body,
+ url: url,
+ statusCode: response.statusCode
}));
} else {
resolve(body);
@@ -173,17 +173,17 @@ ServerConnector.sendPostRequest = function(url, params) {
});
};
-ServerConnector.sendPutRequest = function(url, params) {
+ServerConnector.sendPutRequest = function (url, params) {
var self = this;
if (self.getSessionData().getToken() === undefined) {
self.getSessionData().setLogin(undefined);
window.location.reload(false);
}
- return new Promise(function(resolve, reject) {
+ return new Promise(function (resolve, reject) {
request.put({
- url : url,
- form : params
- }, function(error, response, body) {
+ url: url,
+ form: params
+ }, function (error, response, body) {
if (error) {
reject(error);
} else if (response.statusCode !== 200) {
@@ -195,18 +195,18 @@ ServerConnector.sendPutRequest = function(url, params) {
});
};
-ServerConnector.sendDeleteRequest = function(url, params) {
+ServerConnector.sendDeleteRequest = function (url, params) {
var self = this;
if (self.getSessionData().getToken() === undefined) {
self.getSessionData().setLogin(undefined);
window.location.reload(false);
}
- return new Promise(function(resolve, reject) {
+ return new Promise(function (resolve, reject) {
request({
- method : "DELETE",
- url : url,
- json : params,
- }, function(error, response, body) {
+ method: "DELETE",
+ url: url,
+ json: params,
+ }, function (error, response, body) {
if (error) {
reject(error);
} else if (response.statusCode !== 200) {
@@ -218,18 +218,18 @@ ServerConnector.sendDeleteRequest = function(url, params) {
});
};
-ServerConnector.sendPatchRequest = function(url, params) {
+ServerConnector.sendPatchRequest = function (url, params) {
var self = this;
if (self.getSessionData().getToken() === undefined) {
self.getSessionData().setLogin(undefined);
window.location.reload(false);
}
- return new Promise(function(resolve, reject) {
+ return new Promise(function (resolve, reject) {
request({
- method : "PATCH",
- url : url,
- json : params,
- }, function(error, response, body) {
+ method: "PATCH",
+ url: url,
+ json: params,
+ }, function (error, response, body) {
if (error) {
reject(error);
} else if (response.statusCode !== 200) {
@@ -241,7 +241,7 @@ ServerConnector.sendPatchRequest = function(url, params) {
});
};
-ServerConnector.getToken = function(token) {
+ServerConnector.getToken = function (token) {
if (token !== undefined) {
return Promise.resolve(token);
}
@@ -255,10 +255,10 @@ ServerConnector.getToken = function(token) {
// using current token
if (self.getSessionData().getProject() === null) {
return self.getConfiguration({
- token : token
- }).then(function() {
+ token: token
+ }).then(function () {
return token;
- }, function() {
+ }, function () {
return self.login();
});
} else {
@@ -267,11 +267,11 @@ ServerConnector.getToken = function(token) {
}
};
-ServerConnector.getApiBaseUrl = function() {
+ServerConnector.getApiBaseUrl = function () {
return this.getServerBaseUrl() + "/api/";
};
-ServerConnector.getServerBaseUrl = function() {
+ServerConnector.getServerBaseUrl = function () {
if (this._serverBaseUrl === undefined) {
var url = "" + window.location.href;
if (!url.endsWith("/")) {
@@ -282,7 +282,7 @@ ServerConnector.getServerBaseUrl = function() {
return this._serverBaseUrl;
};
-ServerConnector.createGetParams = function(params, prefix) {
+ServerConnector.createGetParams = function (params, prefix) {
var sorted = [], key;
for (key in params) {
@@ -318,7 +318,7 @@ ServerConnector.createGetParams = function(params, prefix) {
return result;
};
-ServerConnector.getApiUrl = function(paramObj) {
+ServerConnector.getApiUrl = function (paramObj) {
var type = paramObj.type;
var method = paramObj.method;
var params = this.createGetParams(paramObj.params);
@@ -336,85 +336,85 @@ ServerConnector.getApiUrl = function(paramObj) {
return result;
};
-ServerConnector.getProjectsUrl = function(queryParams, filterParams) {
+ServerConnector.getProjectsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- type : "projects/" + queryParams.projectId + "/",
- params : filterParams,
+ type: "projects/" + queryParams.projectId + "/",
+ params: filterParams,
});
};
-ServerConnector.getProjectStatisticsUrl = function(queryParams, filterParams) {
+ServerConnector.getProjectStatisticsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "statistics/",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "statistics/",
+ params: filterParams,
});
};
-ServerConnector.getPublicationsUrl = function(queryParams, filterParams) {
+ServerConnector.getPublicationsUrl = function (queryParams, filterParams) {
filterParams.start = filterParams.start || 0;
filterParams.length = filterParams.length || 10;
return this.getApiUrl({
- url : this.getModelsUrl(queryParams) + "publications/",
- params : filterParams,
+ url: this.getModelsUrl(queryParams) + "publications/",
+ params: filterParams,
});
};
-ServerConnector.getReferenceGenomeUrl = function(queryParams, filterParams) {
+ServerConnector.getReferenceGenomeUrl = function (queryParams, filterParams) {
var version = this.getIdOrAsterisk(queryParams.version);
return this.getApiUrl({
- type : "genomics/taxonomies/" + queryParams.organism + "/genomeTypes/" + queryParams.type + "/versions/" + version
- + "/",
- params : filterParams
+ type: "genomics/taxonomies/" + queryParams.organism + "/genomeTypes/" + queryParams.type + "/versions/" + version
+ + "/",
+ params: filterParams
});
};
-ServerConnector.loginUrl = function() {
+ServerConnector.loginUrl = function () {
return this.getApiUrl({
- type : "/doLogin",
+ type: "/doLogin",
});
};
-ServerConnector.getSuggestedQueryListUrl = function(queryParams, filterParams) {
+ServerConnector.getSuggestedQueryListUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getBioEntitiesUrl(queryParams) + "suggestedQueryList/",
- params : filterParams,
+ url: this.getBioEntitiesUrl(queryParams) + "suggestedQueryList/",
+ params: filterParams,
});
};
-ServerConnector.addCommentUrl = function(queryParams) {
+ServerConnector.addCommentUrl = function (queryParams) {
return this.getApiUrl({
- url : this.getCommentsUrl(queryParams)
+ url: this.getCommentsUrl(queryParams)
});
};
-ServerConnector.addOverlayUrl = function(queryParams) {
+ServerConnector.addOverlayUrl = function (queryParams) {
return this.getApiUrl({
- url : this.getOverlaysUrl(queryParams)
+ url: this.getOverlaysUrl(queryParams)
});
};
-ServerConnector.updateOverlayUrl = function(queryParams) {
+ServerConnector.updateOverlayUrl = function (queryParams) {
return this.getApiUrl({
- url : this.getOverlayByIdUrl(queryParams)
+ url: this.getOverlayByIdUrl(queryParams)
});
};
-ServerConnector.deleteOverlayUrl = function(queryParams) {
+ServerConnector.deleteOverlayUrl = function (queryParams) {
return this.getApiUrl({
- url : this.getOverlayByIdUrl(queryParams),
+ url: this.getOverlayByIdUrl(queryParams),
});
};
-ServerConnector.getOverlaysUrl = function(queryParams, filterParams) {
+ServerConnector.getOverlaysUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "overlays/",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "overlays/",
+ params: filterParams,
});
};
-ServerConnector.getCommentsUrl = function(queryParams, filterParams) {
+ServerConnector.getCommentsUrl = function (queryParams, filterParams) {
var modelId = this.getIdOrAsterisk(queryParams.modelId);
var url = this.getProjectsUrl(queryParams) + "comments/models/" + modelId + "/";
if (queryParams.elementType !== undefined) {
@@ -429,41 +429,41 @@ ServerConnector.getCommentsUrl = function(queryParams, filterParams) {
}
}
return this.getApiUrl({
- url : url,
- params : filterParams,
+ url: url,
+ params: filterParams,
});
};
-ServerConnector.getOverlayByIdUrl = function(queryParams, filterParams) {
+ServerConnector.getOverlayByIdUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getOverlaysUrl(queryParams) + queryParams.overlayId + "/",
- params : filterParams,
+ url: this.getOverlaysUrl(queryParams) + queryParams.overlayId + "/",
+ params: filterParams,
});
};
-ServerConnector.getOverlayElementsUrl = function(queryParams, filterParams) {
+ServerConnector.getOverlayElementsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getModelsUrl(queryParams) + "bioEntities/",
- params : filterParams,
+ url: this.getModelsUrl(queryParams) + "bioEntities/",
+ params: filterParams,
});
};
-ServerConnector.getFullOverlayElementUrl = function(queryParams, filterParams) {
+ServerConnector.getFullOverlayElementUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getAliasesUrl(queryParams) + queryParams.id + "/",
- params : filterParams,
+ url: this.getAliasesUrl(queryParams) + queryParams.id + "/",
+ params: filterParams,
});
};
-ServerConnector.idsToString = function(ids) {
+ServerConnector.idsToString = function (ids) {
var result = "";
if (ids !== undefined) {
- ids.sort(function(a, b) {
+ ids.sort(function (a, b) {
return a - b;
});
for (var i = 0; i < ids.length; i++) {
@@ -479,18 +479,18 @@ ServerConnector.idsToString = function(ids) {
return result;
};
-ServerConnector.pointToString = function(point) {
+ServerConnector.pointToString = function (point) {
return point.x.toFixed(2) + "," + point.y.toFixed(2);
};
-ServerConnector.columnsToString = function(columns) {
+ServerConnector.columnsToString = function (columns) {
if (columns === undefined) {
return "";
}
return columns;
};
-ServerConnector.getModelsUrl = function(queryParams) {
+ServerConnector.getModelsUrl = function (queryParams) {
var modelId = this.getIdOrAsterisk(queryParams.modelId);
var overlayId = queryParams.overlayId;
var url = this.getProjectsUrl(queryParams);
@@ -499,17 +499,17 @@ ServerConnector.getModelsUrl = function(queryParams) {
}
return this.getApiUrl({
- url : url + "models/" + modelId + "/",
+ url: url + "models/" + modelId + "/",
});
};
-ServerConnector.getBioEntitiesUrl = function(queryParams) {
+ServerConnector.getBioEntitiesUrl = function (queryParams) {
return this.getApiUrl({
- url : this.getModelsUrl(queryParams) + "bioEntities/",
+ url: this.getModelsUrl(queryParams) + "bioEntities/",
});
};
-ServerConnector.getIdOrAsterisk = function(id) {
+ServerConnector.getIdOrAsterisk = function (id) {
if (id === undefined || id === "" || id === null) {
return "*";
} else {
@@ -517,99 +517,99 @@ ServerConnector.getIdOrAsterisk = function(id) {
}
};
-ServerConnector.getReactionsUrl = function(queryParams, filterParams) {
+ServerConnector.getReactionsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getBioEntitiesUrl(queryParams) + "reactions/",
- params : filterParams,
+ url: this.getBioEntitiesUrl(queryParams) + "reactions/",
+ params: filterParams,
});
};
-ServerConnector.getAliasesUrl = function(queryParams, filterParams) {
+ServerConnector.getAliasesUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getBioEntitiesUrl(queryParams) + "elements/",
- params : filterParams,
+ url: this.getBioEntitiesUrl(queryParams) + "elements/",
+ params: filterParams,
});
};
-ServerConnector.getConfigurationUrl = function(queryParams, filterParams) {
+ServerConnector.getConfigurationUrl = function (queryParams, filterParams) {
var result = this.getApiUrl({
- type : "configuration/",
- params : filterParams
+ type: "configuration/",
+ params: filterParams
});
return result;
};
-ServerConnector.getSearchUrl = function(queryParams, filterParams) {
+ServerConnector.getSearchUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getModelsUrl(queryParams) + "bioEntities:search",
- params : filterParams,
+ url: this.getModelsUrl(queryParams) + "bioEntities:search",
+ params: filterParams,
});
};
-ServerConnector.getSearchDrugsUrl = function(queryParams, filterParams) {
+ServerConnector.getSearchDrugsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "drugs:search",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "drugs:search",
+ params: filterParams,
});
};
-ServerConnector.getSearchMiRnasUrl = function(queryParams, filterParams) {
+ServerConnector.getSearchMiRnasUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "miRnas:search",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "miRnas:search",
+ params: filterParams,
});
};
-ServerConnector.getSearchChemicalsUrl = function(queryParams, filterParams) {
+ServerConnector.getSearchChemicalsUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "chemicals:search",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "chemicals:search",
+ params: filterParams,
});
};
-ServerConnector.getOverlaySourceUrl = function(queryParams, filterParams) {
+ServerConnector.getOverlaySourceUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getOverlaysUrl(queryParams) + queryParams.overlayId + ":downloadSource",
- params : filterParams
+ url: this.getOverlaysUrl(queryParams) + queryParams.overlayId + ":downloadSource",
+ params: filterParams
});
};
-ServerConnector.getImageUrl = function(queryParams, filterParams) {
+ServerConnector.getImageUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "models/" + queryParams.modelId + ":downloadImage",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "models/" + queryParams.modelId + ":downloadImage",
+ params: filterParams,
});
};
-ServerConnector.getModelPartUrl = function(queryParams, filterParams) {
+ServerConnector.getModelPartUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- url : this.getProjectsUrl(queryParams) + "models/" + queryParams.modelId + ":downloadModel",
- params : filterParams,
+ url: this.getProjectsUrl(queryParams) + "models/" + queryParams.modelId + ":downloadModel",
+ params: filterParams,
});
};
-ServerConnector.getProjectSourceUrl = function(queryParams, filterParams) {
+ServerConnector.getProjectSourceUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- type : "projects/" + queryParams.projectId + ":downloadSource",
- params : filterParams
+ type: "projects/" + queryParams.projectId + ":downloadSource",
+ params: filterParams
});
};
-ServerConnector.getUserUrl = function(queryParams, filterParams) {
+ServerConnector.getUserUrl = function (queryParams, filterParams) {
return this.getApiUrl({
- type : "users/",
- method : queryParams.login,
- params : filterParams,
+ type: "users/",
+ method: queryParams.login,
+ params: filterParams,
});
};
-ServerConnector.getConfiguration = function(params) {
+ServerConnector.getConfiguration = function (params) {
if (params === undefined) {
params = {};
}
var self = this;
if (this._configuration === undefined) {
- return self.readFile(self.getConfigurationUrl()).then(function(content) {
+ return self.readFile(self.getConfigurationUrl()).then(function (content) {
self._configuration = new Configuration(JSON.parse(content));
return Promise.resolve(self._configuration);
});
@@ -618,22 +618,22 @@ ServerConnector.getConfiguration = function(params) {
}
};
-ServerConnector.getConfigurationParam = function(paramId) {
+ServerConnector.getConfigurationParam = function (paramId) {
var self = this;
- return self.getConfiguration().then(function(configuration) {
+ return self.getConfiguration().then(function (configuration) {
return configuration.getOption(paramId);
});
};
-ServerConnector.getModels = function(projectId) {
+ServerConnector.getModels = function (projectId) {
var queryParams = {};
var filterParams = {};
var project;
var self = this;
- return self.getProjectId(projectId).then(function(result) {
+ return self.getProjectId(projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getModelsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var models = [];
var parsedJson = JSON.parse(content);
for (var i = 0; i < parsedJson.length; i++) {
@@ -642,32 +642,32 @@ ServerConnector.getModels = function(projectId) {
return models;
});
};
-ServerConnector.getProject = function(projectId) {
+ServerConnector.getProject = function (projectId) {
var queryParams = {};
var filterParams = {};
var project;
var self = this;
- return self.getProjectId(projectId).then(function(result) {
+ return self.getProjectId(projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getProjectsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
project = new Project(content);
return self.getModels(projectId);
- }).then(function(models) {
+ }).then(function (models) {
project.setModel(models[0]);
return self.getOverlays(projectId);
- }).then(function(overlays) {
+ }).then(function (overlays) {
project.getModel().addLayouts(overlays);
return project;
- }).then(null, function(error) {
+ }).then(null, function (error) {
if ((error instanceof NetworkError)) {
switch (error.statusCode) {
- case HttpStatus.NOT_FOUND:
- return null;
- case HttpStatus.FORBIDDEN:
- return Promise.reject(new SecurityError("Access denied."));
- default:
- return Promise.reject(error);
+ case HttpStatus.NOT_FOUND:
+ return null;
+ case HttpStatus.FORBIDDEN:
+ return Promise.reject(new SecurityError("Access denied."));
+ default:
+ return Promise.reject(error);
}
} else {
return Promise.reject(error);
@@ -675,56 +675,56 @@ ServerConnector.getProject = function(projectId) {
});
};
-ServerConnector.getProjectStatistics = function(projectId) {
+ServerConnector.getProjectStatistics = function (projectId) {
var queryParams = {};
var filterParams = {};
var self = this;
var content;
- return self.getProjectId(projectId).then(function(result) {
+ return self.getProjectId(projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getProjectStatisticsUrl(queryParams, filterParams));
- }).then(function(result) {
+ }).then(function (result) {
content = JSON.parse(result);
return self.getConfiguration();
- }).then(function(configuration) {
+ }).then(function (configuration) {
return new ProjectStatistics(content, configuration);
});
};
-ServerConnector.getLoggedUser = function() {
+ServerConnector.getLoggedUser = function () {
var self = this;
if (self._loggedUser !== undefined) {
return Promise.resolve(self._loggedUser);
} else {
- return self.getUser(self.getSessionData().getLogin()).then(function(user) {
+ return self.getUser(self.getSessionData().getLogin()).then(function (user) {
self._loggedUser = user;
return self._loggedUser;
});
}
};
-ServerConnector.getUser = function(login) {
+ServerConnector.getUser = function (login) {
var self = this;
var queryParams = {
- login : login,
+ login: login,
};
var filterParams = {};
- return self.readFile(self.getUserUrl(queryParams, filterParams)).then(function(content) {
+ return self.readFile(self.getUserUrl(queryParams, filterParams)).then(function (content) {
var obj = JSON.parse(content);
return new User(obj);
});
};
-ServerConnector.getOverlays = function(projectId) {
+ServerConnector.getOverlays = function (projectId) {
var self = this;
var queryParams = {};
var filterParams = {};
- return new Promise(function(resolve, reject) {
- self.getProjectId(projectId).then(function(result) {
+ return new Promise(function (resolve, reject) {
+ self.getProjectId(projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getOverlaysUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var arr = JSON.parse(content);
var result = [];
for (var i = 0; i < arr.length; i++) {
@@ -736,20 +736,20 @@ ServerConnector.getOverlays = function(projectId) {
});
};
-ServerConnector.getOverlayElements = function(overlayId, projectId) {
+ServerConnector.getOverlayElements = function (overlayId, projectId) {
var self = this;
if (overlayId === undefined) {
throw new Error("Layout id must be defined");
}
var queryParams = {
- overlayId : overlayId,
- modelId : "*",
+ overlayId: overlayId,
+ modelId: "*",
};
var filterParams = {};
- return self.getProjectId(projectId).then(function(result) {
+ return self.getProjectId(projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getOverlayElementsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var arr = JSON.parse(content);
var result = [];
for (var i = 0; i < arr.length; i++) {
@@ -766,20 +766,20 @@ ServerConnector.getOverlayElements = function(overlayId, projectId) {
});
};
-ServerConnector.getFullOverlayElement = function(params) {
+ServerConnector.getFullOverlayElement = function (params) {
var self = this;
var queryParams = {
- overlayId : params.overlay.getId(),
- modelId : params.element.getModelId(),
- id : params.element.getId(),
+ overlayId: params.overlay.getId(),
+ modelId: params.element.getModelId(),
+ id: params.element.getId(),
};
var filterParams = {};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getFullOverlayElementUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var element = JSON.parse(content);
var result = null;
if (element.type === "REACTION") {
@@ -793,7 +793,7 @@ ServerConnector.getFullOverlayElement = function(params) {
});
};
-ServerConnector.getProjectId = function(projectId) {
+ServerConnector.getProjectId = function (projectId) {
var self = this;
if (projectId !== undefined && projectId !== null && projectId !== "") {
return Promise.resolve(projectId);
@@ -804,33 +804,33 @@ ServerConnector.getProjectId = function(projectId) {
}
};
-ServerConnector.getLogoImg = function() {
+ServerConnector.getLogoImg = function () {
return this.getConfigurationParam(ConfigurationType.LOGO_IMG);
};
-ServerConnector.getLogoLink = function() {
+ServerConnector.getLogoLink = function () {
return this.getConfigurationParam(ConfigurationType.LOGO_LINK);
};
-ServerConnector.getMaxSearchDistance = function() {
+ServerConnector.getMaxSearchDistance = function () {
return this.getConfigurationParam(ConfigurationType.SEARCH_DISTANCE);
};
-ServerConnector.getOverlayById = function(overlayId, projectId) {
+ServerConnector.getOverlayById = function (overlayId, projectId) {
var self = this;
var queryParams = {
- overlayId : overlayId
+ overlayId: overlayId
};
var filterParams = {};
- return self.getProjectId(projectId).then(function(data) {
+ return self.getProjectId(projectId).then(function (data) {
queryParams.projectId = data;
return self.readFile(self.getOverlayByIdUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
return new LayoutData(JSON.parse(content));
});
};
-ServerConnector.getReactions = function(params) {
+ServerConnector.getReactions = function (params) {
var self = this;
var queryParams = {};
if (params.ids === undefined) {
@@ -840,11 +840,11 @@ ServerConnector.getReactions = function(params) {
params.participantId = [];
}
var filterParams = {
- id : params.ids,
- columns : params.columns,
- participantId : params.participantId,
+ id: params.ids,
+ columns: params.columns,
+ participantId: params.participantId,
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
if (filterParams.id.length > 100 || filterParams.participantId.length > 100) {
return self.sendPostRequest(self.getReactionsUrl(queryParams), filterParams);
@@ -852,7 +852,7 @@ ServerConnector.getReactions = function(params) {
return self.readFile(self.getReactionsUrl(queryParams, filterParams));
}
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -862,10 +862,10 @@ ServerConnector.getReactions = function(params) {
});
};
-ServerConnector.getAliases = function(params) {
+ServerConnector.getAliases = function (params) {
var self = this;
var queryParams = {
- modelId : params.modelId,
+ modelId: params.modelId,
};
if (params.ids === undefined) {
params.ids = [];
@@ -877,21 +877,21 @@ ServerConnector.getAliases = function(params) {
params.excludedCompartmentIds = [];
}
var filterParams = {
- id : params.ids,
- columns : params.columns,
- type : params.type,
- excludedCompartmentIds : params.excludedCompartmentIds,
- includedCompartmentIds : params.includedCompartmentIds,
+ id: params.ids,
+ columns: params.columns,
+ type: params.type,
+ excludedCompartmentIds: params.excludedCompartmentIds,
+ includedCompartmentIds: params.includedCompartmentIds,
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
if (filterParams.id.length > 100) {
return self.sendPostRequest(self.getAliasesUrl(queryParams), filterParams);
} else {
return self.readFile(self.getAliasesUrl(queryParams, filterParams));
}
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -901,25 +901,25 @@ ServerConnector.getAliases = function(params) {
});
};
-ServerConnector.getLightComments = function(params) {
- params.columns = [ "id", "elementId", "modelId", "type", "icon", "removed", "pinned" ];
+ServerConnector.getLightComments = function (params) {
+ params.columns = ["id", "elementId", "modelId", "type", "icon", "removed", "pinned"];
return this.getComments(params);
};
-ServerConnector.getComments = function(params) {
+ServerConnector.getComments = function (params) {
var self = this;
var queryParams = {
- elementId : params.elementId,
- elementType : params.elementType,
- coordinates : params.coordinates,
+ elementId: params.elementId,
+ elementType: params.elementType,
+ coordinates: params.coordinates,
};
var filterParams = {
- columns : params.columns
+ columns: params.columns
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getCommentsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -929,7 +929,7 @@ ServerConnector.getComments = function(params) {
});
};
-ServerConnector.getSessionData = function(project) {
+ServerConnector.getSessionData = function (project) {
if (this._sessionData === undefined) {
this._sessionData = new SessionData(project);
}
@@ -939,19 +939,19 @@ ServerConnector.getSessionData = function(project) {
return this._sessionData;
};
-ServerConnector.getClosestElementsByCoordinates = function(params) {
+ServerConnector.getClosestElementsByCoordinates = function (params) {
var self = this;
var queryParams = {
- modelId : params.modelId
+ modelId: params.modelId
};
var filterParams = {
- coordinates : params.coordinates,
- count : params.count,
+ coordinates: params.coordinates,
+ count: params.count,
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -961,7 +961,7 @@ ServerConnector.getClosestElementsByCoordinates = function(params) {
});
};
-ServerConnector.login = function(login, password) {
+ServerConnector.login = function (login, password) {
var self = this;
var params = {};
if (login !== undefined) {
@@ -971,10 +971,10 @@ ServerConnector.login = function(login, password) {
params.login = "anonymous";
}
self.getSessionData().setToken("");
- return self.sendPostRequest(self.loginUrl(), params).then(function() {
+ return self.sendPostRequest(self.loginUrl(), params).then(function () {
self.getSessionData().setLogin(params.login);
return Promise.resolve(self.getSessionData().getToken());
- }, function(error) {
+ }, function (error) {
if (error instanceof NetworkError && error.statusCode === HttpStatus.FORBIDDEN) {
throw new InvalidCredentialsError("Invalid credentials");
} else {
@@ -983,27 +983,27 @@ ServerConnector.login = function(login, password) {
});
};
-ServerConnector.logout = function() {
+ServerConnector.logout = function () {
var self = this;
self.getSessionData().setToken(undefined);
self.getSessionData().setLogin(undefined);
return Promise.resolve();
};
-ServerConnector.getElementsByQuery = function(params) {
+ServerConnector.getElementsByQuery = function (params) {
var self = this;
var queryParams = {
- modelId : params.modelId
+ modelId: params.modelId
};
var filterParams = {
- query : params.query,
- perfectMatch : params.perfectMatch,
+ query: params.query,
+ perfectMatch: params.perfectMatch,
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -1013,16 +1013,16 @@ ServerConnector.getElementsByQuery = function(params) {
});
};
-ServerConnector.getDrugsByQuery = function(params) {
+ServerConnector.getDrugsByQuery = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- query : params.query
+ query: params.query
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchDrugsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -1032,16 +1032,16 @@ ServerConnector.getDrugsByQuery = function(params) {
});
};
-ServerConnector.getMiRnasByQuery = function(params) {
+ServerConnector.getMiRnasByQuery = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- query : params.query
+ query: params.query
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchMiRnasUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -1051,16 +1051,16 @@ ServerConnector.getMiRnasByQuery = function(params) {
});
};
-ServerConnector.getChemicalsByQuery = function(params) {
+ServerConnector.getChemicalsByQuery = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- query : params.query
+ query: params.query
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchChemicalsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var array = JSON.parse(content);
var result = [];
for (var i = 0; i < array.length; i++) {
@@ -1070,96 +1070,96 @@ ServerConnector.getChemicalsByQuery = function(params) {
});
};
-ServerConnector.getOverlaySourceDownloadUrl = function(params) {
+ServerConnector.getOverlaySourceDownloadUrl = function (params) {
var self = this;
var queryParams = {
- overlayId : params.overlayId
+ overlayId: params.overlayId
};
var filterParams = {};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.getOverlaySourceUrl(queryParams, filterParams);
});
};
-ServerConnector.getImageDownloadUrl = function(params) {
+ServerConnector.getImageDownloadUrl = function (params) {
var self = this;
var queryParams = {
- projectId : params.projectId,
- modelId : params.modelId,
+ projectId: params.projectId,
+ modelId: params.modelId,
};
var filterParams = {
- token : params.token,
- polygonString : params.polygonString,
- handlerClass : params.handlerClass,
- backgroundOverlayId : params.backgroundOverlayId,
- zoomLevel : params.zoomLevel,
- overlayIds : this.idsToString(params.overlayIds),
+ token: params.token,
+ polygonString: params.polygonString,
+ handlerClass: params.handlerClass,
+ backgroundOverlayId: params.backgroundOverlayId,
+ zoomLevel: params.zoomLevel,
+ overlayIds: this.idsToString(params.overlayIds),
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.getImageUrl(queryParams, filterParams);
});
};
-ServerConnector.getModelDownloadUrl = function(params) {
+ServerConnector.getModelDownloadUrl = function (params) {
var self = this;
var queryParams = {
- projectId : params.projectId,
- modelId : params.modelId,
+ projectId: params.projectId,
+ modelId: params.modelId,
};
var filterParams = {
- token : params.token,
- polygonString : params.polygonString,
- handlerClass : params.handlerClass,
- backgroundOverlayId : params.backgroundOverlayId,
- zoomLevel : params.zoomLevel,
- overlayIds : this.idsToString(params.overlayIds),
+ token: params.token,
+ polygonString: params.polygonString,
+ handlerClass: params.handlerClass,
+ backgroundOverlayId: params.backgroundOverlayId,
+ zoomLevel: params.zoomLevel,
+ overlayIds: this.idsToString(params.overlayIds),
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.getModelPartUrl(queryParams, filterParams);
});
};
-ServerConnector.getImageConverters = function() {
+ServerConnector.getImageConverters = function () {
var self = this;
- return self.getConfiguration().then(function(configuration) {
+ return self.getConfiguration().then(function (configuration) {
return configuration.getImageConverters();
});
};
-ServerConnector.getModelConverters = function() {
+ServerConnector.getModelConverters = function () {
var self = this;
- return self.getConfiguration().then(function(configuration) {
+ return self.getConfiguration().then(function (configuration) {
return configuration.getModelConverters();
});
};
-ServerConnector.getProjectSourceDownloadUrl = function(params) {
+ServerConnector.getProjectSourceDownloadUrl = function (params) {
if (params === undefined) {
params = {};
}
var queryParams = {};
var filterParams = {};
var self = this;
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.getProjectSourceUrl(queryParams, filterParams);
});
};
-ServerConnector.getDrugNamesByTarget = function(params) {
+ServerConnector.getDrugNamesByTarget = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- columns : [ "name" ],
- target : params.target.getType() + ":" + params.target.getId()
+ columns: ["name"],
+ target: params.target.getType() + ":" + params.target.getId()
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchDrugsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var result = [];
var object = JSON.parse(content);
for (var i = 0; i < object.length; i++) {
@@ -1169,17 +1169,17 @@ ServerConnector.getDrugNamesByTarget = function(params) {
});
};
-ServerConnector.getMiRnaNamesByTarget = function(params) {
+ServerConnector.getMiRnaNamesByTarget = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- columns : [ "name" ],
- target : params.target.getType() + ":" + params.target.getId()
+ columns: ["name"],
+ target: params.target.getType() + ":" + params.target.getId()
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchMiRnasUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var result = [];
var object = JSON.parse(content);
for (var i = 0; i < object.length; i++) {
@@ -1189,17 +1189,17 @@ ServerConnector.getMiRnaNamesByTarget = function(params) {
});
};
-ServerConnector.getChemicalNamesByTarget = function(params) {
+ServerConnector.getChemicalNamesByTarget = function (params) {
var self = this;
var queryParams = {};
var filterParams = {
- columns : [ "name" ],
- target : params.target.getType() + ":" + params.target.getId()
+ columns: ["name"],
+ target: params.target.getType() + ":" + params.target.getId()
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getSearchChemicalsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
var result = [];
var object = JSON.parse(content);
for (var i = 0; i < object.length; i++) {
@@ -1209,13 +1209,13 @@ ServerConnector.getChemicalNamesByTarget = function(params) {
});
};
-ServerConnector.addComment = function(params) {
+ServerConnector.addComment = function (params) {
var self = this;
var queryParams = {
- elementId : params.elementId,
- elementType : params.elementType,
- coordinates : self.pointToString(params.coordinates),
- modelId : params.modelId,
+ elementId: params.elementId,
+ elementType: params.elementType,
+ coordinates: self.pointToString(params.coordinates),
+ modelId: params.modelId,
};
var filterParams = params;
delete filterParams.elementId;
@@ -1226,33 +1226,33 @@ ServerConnector.addComment = function(params) {
filterParams.coordinates = self.pointToString(params.coordinates);
}
delete filterParams.modelId;
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.sendPostRequest(self.addCommentUrl(queryParams), filterParams);
- }).then(function(content) {
+ }).then(function (content) {
var response = JSON.parse(content);
return new Comment(response);
});
};
-ServerConnector.addOverlay = function(params) {
+ServerConnector.addOverlay = function (params) {
var self = this;
var queryParams = {};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.sendPostRequest(self.addOverlayUrl(queryParams), params);
- }).then(function(content) {
+ }).then(function (content) {
return new LayoutData(JSON.parse(content));
});
};
-ServerConnector.updateOverlay = function(params) {
+ServerConnector.updateOverlay = function (params) {
var self = this;
var queryParams = {
- overlayId : params.overlayId
+ overlayId: params.overlayId
};
var filterParams = {
- overlay : {}
+ overlay: {}
};
if (params.name !== undefined) {
filterParams.overlay.name = params.name;
@@ -1260,44 +1260,44 @@ ServerConnector.updateOverlay = function(params) {
if (params.description !== undefined) {
filterParams.overlay.description = params.description;
}
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.sendPatchRequest(self.updateOverlayUrl(queryParams), filterParams);
});
};
-ServerConnector.removeOverlay = function(params) {
+ServerConnector.removeOverlay = function (params) {
var self = this;
var queryParams = {
- overlayId : params.overlayId
+ overlayId: params.overlayId
};
var filterParams = {};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.sendDeleteRequest(self.deleteOverlayUrl(queryParams), filterParams);
});
};
-ServerConnector.getSuggestedQueryList = function(projectId) {
+ServerConnector.getSuggestedQueryList = function (projectId) {
var self = this;
- return self.getProjectId(projectId).then(function(result) {
+ return self.getProjectId(projectId).then(function (result) {
projectId = result;
return self.readFile(self.getSuggestedQueryListUrl({
- projectId : projectId
+ projectId: projectId
}));
- }).then(function(content) {
+ }).then(function (content) {
return JSON.parse(content);
});
};
-ServerConnector.getOverlayTypes = function() {
+ServerConnector.getOverlayTypes = function () {
var self = this;
- return self.getConfiguration().then(function(configuration) {
+ return self.getConfiguration().then(function (configuration) {
return configuration.getOverlayTypes();
});
};
-ServerConnector.getPublications = function(params) {
+ServerConnector.getPublications = function (params) {
var self = this;
if (params === undefined) {
params = {};
@@ -1305,24 +1305,24 @@ ServerConnector.getPublications = function(params) {
var queryParams = {};
var filterParams = {
- start : params.start,
- length : params.length,
- sortColumn : params.sortColumn,
- sortOrder : params.sortOrder,
- search : params.search,
+ start: params.start,
+ length: params.length,
+ sortColumn: params.sortColumn,
+ sortOrder: params.sortOrder,
+ search: params.search,
};
- return self.getProjectId(params.projectId).then(function(result) {
+ return self.getProjectId(params.projectId).then(function (result) {
queryParams.projectId = result;
return self.readFile(self.getPublicationsUrl(queryParams, filterParams));
- }).then(function(content) {
+ }).then(function (content) {
return JSON.parse(content);
});
};
-ServerConnector.getReferenceGenome = function(params) {
+ServerConnector.getReferenceGenome = function (params) {
var self = this;
var filterParams = {};
- return self.readFile(self.getReferenceGenomeUrl(params, filterParams)).then(function(content) {
+ return self.readFile(self.getReferenceGenomeUrl(params, filterParams)).then(function (content) {
return new ReferenceGenome(JSON.parse(content));
});
};
--
GitLab