From 47a081440e1de8364d9645f1570e248f6e3ad813 Mon Sep 17 00:00:00 2001
From: "piotr.gawron" <piotr.gawron@uni-new>
Date: Fri, 30 Sep 2016 14:15:24 +0200
Subject: [PATCH] editor refactoring to match merge species and alias
---
.../gui/detailstab/ElementDetailsPanel.java | 1594 ++++++++---------
1 file changed, 797 insertions(+), 797 deletions(-)
diff --git a/editor/src/main/java/lcsb/mapviewer/editor/gui/detailstab/ElementDetailsPanel.java b/editor/src/main/java/lcsb/mapviewer/editor/gui/detailstab/ElementDetailsPanel.java
index 092ca4092b..e544119e74 100644
--- a/editor/src/main/java/lcsb/mapviewer/editor/gui/detailstab/ElementDetailsPanel.java
+++ b/editor/src/main/java/lcsb/mapviewer/editor/gui/detailstab/ElementDetailsPanel.java
@@ -1,797 +1,797 @@
-package lcsb.mapviewer.editor.gui.detailstab;
-
-import java.awt.Color;
-import java.awt.Dimension;
-import java.awt.GridBagConstraints;
-import java.awt.GridBagLayout;
-import java.awt.event.ActionEvent;
-import java.awt.event.ActionListener;
-import java.awt.event.FocusEvent;
-import java.awt.event.FocusListener;
-import java.awt.event.MouseAdapter;
-import java.awt.event.MouseEvent;
-import java.util.ArrayList;
-import java.util.List;
-
-import javax.swing.DefaultListModel;
-import javax.swing.JButton;
-import javax.swing.JColorChooser;
-import javax.swing.JLabel;
-import javax.swing.JList;
-import javax.swing.JMenuItem;
-import javax.swing.JOptionPane;
-import javax.swing.JPanel;
-import javax.swing.JPopupMenu;
-import javax.swing.JScrollPane;
-import javax.swing.JTextArea;
-import javax.swing.JTextField;
-import javax.swing.text.JTextComponent;
-
-import lcsb.mapviewer.commands.CommandExecutionException;
-import lcsb.mapviewer.commands.ModelCommand;
-import lcsb.mapviewer.common.exception.InvalidArgumentException;
-import lcsb.mapviewer.common.exception.InvalidStateException;
-import lcsb.mapviewer.common.exception.NotImplementedException;
-import lcsb.mapviewer.editor.gui.ElementModifiedEvent;
-import lcsb.mapviewer.editor.gui.ElementModifiedEventListener;
-import lcsb.mapviewer.editor.gui.GuiStyle;
-import lcsb.mapviewer.editor.gui.MiriamDataCellRender;
-import lcsb.mapviewer.editor.gui.objectedit.MiriamDataDialog;
-import lcsb.mapviewer.editor.gui.objectedit.ObjectEditDialog;
-import lcsb.mapviewer.editor.gui.objectedit.StringEditDialog;
-import lcsb.mapviewer.model.map.MiriamData;
-import lcsb.mapviewer.model.map.layout.alias.Alias;
-import lcsb.mapviewer.model.map.layout.alias.CompartmentAlias;
-import lcsb.mapviewer.model.map.layout.alias.ComplexAlias;
-import lcsb.mapviewer.model.map.model.Model;
-import lcsb.mapviewer.model.map.reaction.Reaction;
-
-import org.apache.log4j.Logger;
-
-/**
- * {@link JPanel} with detail information about selected {@link Alias} or
- * {@link Reaction}.
- *
- * @author Piotr Gawron
- *
- */
-public class ElementDetailsPanel extends JPanel {
-
- /**
- * X ratio between label and field that contains data in a single row. (take a
- * look at {@link GridBagConstraints#weightx}).
- */
- private static final double GRID_RATIO = 0.5;
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
-
- /**
- * Default class logger.
- */
- private final Logger logger = Logger.getLogger(ElementDetailsPanel.class);
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#name} parameter.
- */
- private JLabel nameLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#getElementId()}
- * parameter.
- */
- private JLabel idLabel;
-
- /**
- * Label for complex parameter.
- */
- private JLabel complexLabel;
-
- /**
- * Label for {@link Alias#compartmentAlias} parameter.
- */
- private JLabel compartmentLabel;
-
- /**
- * Label for {@link Alias#fontSize} parameter.
- */
- private JLabel fontSizeLabel;
-
- /**
- * Label for {@link Alias#color} parameter.
- */
- private JLabel colorLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#notes} parameter.
- */
- private JLabel notesLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#symbol} parameter.
- */
- private JLabel symbolLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#fullName} parameter.
- */
- private JLabel fullNameLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#abbreviation} parameter.
- */
- private JLabel abbreviationLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#formula} parameter.
- */
- private JLabel formulaLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#synonyms} parameter.
- */
- private JLabel synonymsLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#formerSymbols} parameter.
- */
- private JLabel formerSymbolsLabel;
-
- /**
- * Label for {@link lcsb.mapviewer.model.map.Element#symbol} parameter.
- */
- private JLabel miriamDataLabel;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#name}
- * parameter.
- */
- private JTextField nameText;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#name}
- * parameter.
- */
- private JTextField idText;
-
- /**
- * {@link JTextField} for complex parameter.
- */
- private JTextField complexText;
-
- /**
- * {@link JTextField} for {@link Alias#compartmentAlias} parameter.
- */
- private JTextField compartmentText;
-
- /**
- * {@link JTextField} for {@link Alias#fontSize} parameter.
- */
- private JTextField fontSizeText;
-
- /**
- * {@link JTextField} for {@link Alias#color} parameter.
- */
- private JButton colorButton;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#notes}
- * parameter.
- */
- private JTextArea notesText;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#symbol}
- * parameter.
- */
- private JTextField symbolText;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#fullName}
- * parameter.
- */
- private JTextField fullNameText;
-
- /**
- * {@link JTextField} for
- * {@link lcsb.mapviewer.model.map.Element#abbreviation} parameter.
- */
- private JTextField abbreviationText;
-
- /**
- * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#formula}
- * parameter.
- */
- private JTextField formulaText;
-
- /**
- * {@link JList} for {@link lcsb.mapviewer.model.map.Element#synonyms}
- * parameter.
- */
- private JList<String> synonymsList;
-
- /**
- * {@link JList} for
- * {@link lcsb.mapviewer.model.map.Element#formerSymbols} parameter.
- */
- private JList<String> formerSymbolsList;
-
- /**
- * {@link JList} for {@link lcsb.mapviewer.model.map.Element#miriamData}
- * parameter.
- */
- private JList<MiriamData> miriamDataList;
-
- /**
- * List of synonyms in {@link lcsb.mapviewer.model.map.Element#synonyms}.
- *
- * @see {@link #synonymsList}
- */
- private DefaultListModel<String> synonymsListModel = new DefaultListModel<>();
-
- /**
- * List of synonyms in {@link lcsb.mapviewer.model.map.Element#formerSymbols}.
- *
- * @see {@link #formerSymbolsList}
- */
- private DefaultListModel<String> formerSymbolsListModel = new DefaultListModel<>();
-
- /**
- * List of synonyms in {@link lcsb.mapviewer.model.map.Element#miriamData}.
- *
- * @see {@link #miriamDataList}
- */
- private DefaultListModel<MiriamData> miriamDataListModel = new DefaultListModel<>();
-
- /**
- * {@link Alias} or {@link Reaction} that is currently selected.
- */
- private Object element;
-
- /**
- * List of listeners that should be thrown when some properties of selected
- * {@link Alias} is changed.
- */
- private List<ElementModifiedEventListener<Alias>> aliasListeners = new ArrayList<>();
-
- /**
- * List of listeners that should be thrown when some properties of selected
- * {@link Reaction} is changed.
- */
- private List<ElementModifiedEventListener<Reaction>> reactionListeners = new ArrayList<>();
-
- /**
- * This flag value is set when data in the panel is updated from newly
- * selected element.
- */
- private boolean updatingData = false;
-
- /**
- * Default constructor.
- */
- public ElementDetailsPanel() {
- GridBagLayout gridLayout = new GridBagLayout();
- setLayout(gridLayout);
- setPreferredSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH, GuiStyle.DETAIL_PANEL_HEIGHT));
-
- nameLabel = new JLabel("Name: ");
- idLabel = new JLabel("ID: ");
- complexLabel = new JLabel("Parent complex: ");
- compartmentLabel = new JLabel("Parent compartment: ");
- fontSizeLabel = new JLabel("Font size: ");
- colorLabel = new JLabel("Color: ");
- notesLabel = new JLabel("Notes: ");
- symbolLabel = new JLabel("Symbol: ");
- fullNameLabel = new JLabel("Full name: ");
- abbreviationLabel = new JLabel("Abbreviation: ");
- formulaLabel = new JLabel("Formula: ");
- synonymsLabel = new JLabel("Synonyms: ");
- formerSymbolsLabel = new JLabel("Former symbols: ");
- miriamDataLabel = new JLabel("Annotations: ");
-
- nameText = new JTextField();
- idText = new JTextField();
- idText.setEditable(false);
- idText.setEnabled(false);
- complexText = new JTextField();
- complexText.setEditable(false);
- complexText.setEnabled(false);
- compartmentText = new JTextField();
- compartmentText.setEditable(false);
- compartmentText.setEnabled(false);
- fontSizeText = new JTextField();
- colorButton = new JButton("Change");
- notesText = new JTextArea();
- notesText.setLineWrap(true);
- notesText.setWrapStyleWord(true);
- symbolText = new JTextField();
- fullNameText = new JTextField();
- abbreviationText = new JTextField();
- formulaText = new JTextField();
- synonymsList = new JList<>(synonymsListModel);
- formerSymbolsList = new JList<>(formerSymbolsListModel);
- miriamDataList = new JList<>(miriamDataListModel);
- miriamDataList.setCellRenderer(new MiriamDataCellRender());
-
- assignCommandToField(nameText, new CreateChangeNameCommand(nameText));
- assignCommandToField(fontSizeText, new CreateChangeFontSizeCommand(fontSizeText));
- assignCommandToField(notesText, new CreateChangeNotesCommand(notesText));
- assignCommandToField(symbolText, new CreateChangeSymbolCommand(symbolText));
- assignCommandToField(fullNameText, new CreateChangeFullNameCommand(fullNameText));
- assignCommandToField(abbreviationText, new CreateChangeAbbreviationCommand(abbreviationText));
- assignCommandToField(formulaText, new CreateChangeFormulaCommand(formulaText));
- assignColorCommandToField(colorButton, new CreateChangeColorCommand(colorButton));
- assignCommandToList(synonymsList, new CreateChangeSynonymCommand(synonymsList), "Synonym", String.class);
- assignCommandToList(formerSymbolsList, new CreateChangeFormerSymbolCommand(formerSymbolsList), "Former symbol", String.class);
- assignCommandToList(miriamDataList, new CreateChangeMiriamDataCommand(miriamDataList), "Miriam data", MiriamData.class);
- }
-
- /**
- * Creates listener that will handle changes on list parameter. It assigns
- * {@link CreateListPropertyChangeCommand<T>} object that will create a proper
- * {@link ModelCommand} when changes are made to the parameter field.
- *
- * @param list
- * component where changes can be made
- * @param dialogTitle
- * title of the dialog used for editing property
- * @param clazz
- * class type of the property
- * @param createCommandObject
- * object that will create apropriate {@link ModelCommand}
- * @param <T>
- * type of the objects included in the parameter list
- */
- private <T> void assignCommandToList(JList<T> list, CreateListPropertyChangeCommand<T> createCommandObject, String dialogTitle, Class<T> clazz) {
- list.addMouseListener(new MouseAdapter() {
- @Override
- public void mousePressed(MouseEvent e) {
- logger.debug("Mouse pressed");
- if (e.isPopupTrigger()) {
- doPop(e);
- }
- }
-
- @Override
- public void mouseReleased(MouseEvent e) {
- if (e.isPopupTrigger()) {
- doPop(e);
- }
- }
-
- private void doPop(MouseEvent e) {
- JPopupMenu menu = new JPopupMenu();
- JMenuItem addItem = new JMenuItem("Add");
- menu.add(addItem);
- addItem.addActionListener(new ActionListener() {
- @Override
- public void actionPerformed(ActionEvent e) {
- ObjectEditDialog<T> editDialog = createEditDialog(dialogTitle, clazz);
- editDialog.addOkListener(new ElementModifiedEventListener<T>() {
-
- @Override
- public void actionPerformed(ElementModifiedEvent<T> e) throws CommandExecutionException {
- T s = e.getElement();
- List<T> values = new ArrayList<>();
- values.add(s);
- ModelCommand modelCommand = createCommandObject.createAddCommand(getModel(), (Alias) element, values);
- processCommand(modelCommand);
- ((DefaultListModel<T>) list.getModel()).addElement(s);
- }
- });
- editDialog.editObject(null);
- }
-
- });
- if (list.getSelectedIndices().length == 1) {
- JMenuItem editItem = new JMenuItem("Edit");
- menu.add(editItem);
- editItem.addActionListener(new ActionListener() {
- @Override
- public void actionPerformed(ActionEvent e) {
- ObjectEditDialog<T> editDialog = createEditDialog(dialogTitle, clazz);
- editDialog.addOkListener(new ElementModifiedEventListener<T>() {
- @Override
- public void actionPerformed(ElementModifiedEvent<T> e) throws CommandExecutionException {
- T s = e.getElement();
- ModelCommand modelCommand = createCommandObject.createChangeCommand(getModel(), (Alias) element, s, list.getSelectedValue());
- processCommand(modelCommand);
- ((DefaultListModel<T>) list.getModel()).set(list.getSelectedIndices()[0], s);
- }
- });
- editDialog.editObject(list.getSelectedValue());
- }
- });
- }
- if (list.getSelectedIndices().length > 0) {
- JMenuItem removeItem = new JMenuItem("Remove");
- menu.add(removeItem);
- removeItem.addActionListener(new ActionListener() {
- @Override
- public void actionPerformed(ActionEvent e) {
- List<T> elements = new ArrayList<>();
- for (T string : list.getSelectedValuesList()) {
- elements.add(string);
- }
- ModelCommand modelCommand = createCommandObject.createRemoveCommand(getModel(), (Alias) element, elements);
- try {
- processCommand(modelCommand);
- for (T string : elements) {
- ((DefaultListModel<T>) list.getModel()).removeElement(string);
- }
- } catch (CommandExecutionException exception) {
- JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
- }
- }
- });
- }
- menu.show(e.getComponent(), e.getX(), e.getY());
- }
- });
- }
-
- /**
- * Creates listener that will handle changes on color button parameter. It
- * assigns {@link CreateListPropertyChangeCommand<T>} object that will create
- * a proper {@link ModelCommand} when changes are made to the parameter field.
- *
- * @param colorButton
- * component where changes can be made
- * @param createCommandObject
- * object that will create apropriate {@link ModelCommand}
- */
- private void assignColorCommandToField(JButton colorButton, CreatePropertyChangeCommand createCommandObject) {
- colorButton.addActionListener(new ActionListener() {
- @Override
- public void actionPerformed(ActionEvent e) {
- if (!updatingData && element != null) {
- Color newColor = JColorChooser.showDialog(ElementDetailsPanel.this, "Choose Color", colorButton.getBackground());
- if (newColor != null) {
- colorButton.setBackground(newColor);
- ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
- try {
- processCommand(modelCommand);
- } catch (CommandExecutionException exception) {
- JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
- }
- }
- }
- }
-
- });
- }
-
- /**
- * Executes parameter {@link ModelCommand} and fires appropraite listeners.
- *
- * @param modelCommand
- * command to be executed
- * @throws CommandExecutionException
- * thrown when modelCommand cannot be executed due to some
- * problematic input data
- */
- public void processCommand(ModelCommand modelCommand) throws CommandExecutionException {
- modelCommand.execute();
- if (modelCommand != null) {
- if (element instanceof Alias) {
- ElementModifiedEvent<Alias> event = new ElementModifiedEvent<Alias>(this, (Alias) element, modelCommand);
- for (ElementModifiedEventListener<Alias> listener : aliasListeners) {
- listener.actionPerformed(event);
- }
- } else if (element instanceof Reaction) {
- ElementModifiedEvent<Reaction> event = new ElementModifiedEvent<Reaction>(this, (Reaction) element, modelCommand);
- for (ElementModifiedEventListener<Reaction> listener : reactionListeners) {
- listener.actionPerformed(event);
- }
- } else {
- throw new NotImplementedException("Don't know how to handle: " + element.getClass());
- }
- }
- }
-
- /**
- * Creates listener that will handle changes on {@link JTextComponent}
- * parameter. It assigns {@link CreateListPropertyChangeCommand<T>} object
- * that will create a proper {@link ModelCommand} when changes are made to the
- * parameter field.
- *
- * @param field
- * component where changes can be made
- * @param createCommandObject
- * object that will create apropriate {@link ModelCommand}
- */
- private void assignCommandToField(JTextComponent field, CreatePropertyChangeCommand createCommandObject) {
- field.addFocusListener(new FocusListener() {
- public void focusGained(FocusEvent e) {
- }
-
- public void focusLost(FocusEvent e) {
- if (!updatingData && element != null) {
- ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
- try {
- processCommand(modelCommand);
- } catch (CommandExecutionException exception) {
- JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
- }
- }
- }
- });
- if (field instanceof JTextField) {
- ((JTextField) field).addActionListener(new ActionListener() {
- @Override
- public void actionPerformed(ActionEvent e) {
- if (!updatingData && element != null) {
- ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
- try {
- processCommand(modelCommand);
- } catch (CommandExecutionException exception) {
- JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
- }
- }
- }
- });
- }
-
- }
-
- /**
- * Sets {@link #element}.
- *
- * @param object
- * new {@link #element} value
- */
- public void setElement(Object object) {
- this.element = object;
-
- updateData(object);
- }
-
- /**
- * Updates data in the panel using parameter object as a data source.
- *
- * @param object
- * object for which data details should be available
- */
- private void updateData(Object object) {
- updatingData = true;
- removeAll();
- try {
- if (object instanceof Alias) {
- createAliasPanel((Alias) object);
- } else if (object instanceof Reaction) {
- createReactionPanel((Reaction) object);
- } else if (object != null) {
- throw new InvalidArgumentException("Cannot provide details for object: " + object);
- }
- validate();
- repaint();
- } finally {
- updatingData = false;
- }
-
- }
-
- /**
- * Creates property details panel for reaction.
- *
- * @param object
- * reaction for which panel will be created
- */
- private void createReactionPanel(Reaction object) {
- throw new NotImplementedException();
-
- }
-
- /**
- * Creates property details panel for alias.
- *
- * @param alias
- * {@link Alias} for which panel will be created
- */
- private void createAliasPanel(Alias alias) {
- int row = 0;
- add(nameLabel, createLayoutConstraints(0, row));
- add(nameText, createLayoutConstraints(1, row));
- nameText.setText(alias.getElement().getName());
- row++;
-
- add(idLabel, createLayoutConstraints(0, row));
- add(idText, createLayoutConstraints(1, row));
- idText.setText(alias.getAliasId());
- row++;
-
- add(complexLabel, createLayoutConstraints(0, row));
- add(complexText, createLayoutConstraints(1, row));
- if (alias.getParent() instanceof ComplexAlias) {
- complexText.setText(alias.getParent().getAliasId());
- } else {
- complexText.setText("N/A");
- }
- row++;
-
- add(compartmentLabel, createLayoutConstraints(0, row));
- add(compartmentText, createLayoutConstraints(1, row));
- if (alias.getCompartmentAlias() instanceof CompartmentAlias) {
- compartmentText.setText(alias.getCompartmentAlias().getAliasId());
- } else {
- compartmentText.setText("N/A");
- }
- row++;
-
- add(fontSizeLabel, createLayoutConstraints(0, row));
- add(fontSizeText, createLayoutConstraints(1, row));
- fontSizeText.setText(alias.getFontSize() + "");
- row++;
-
- add(colorLabel, createLayoutConstraints(0, row));
- add(colorButton, createLayoutConstraints(1, row));
- colorButton.setBackground(alias.getColor());
- row++;
-
- add(notesLabel, createLayoutConstraints(0, row));
- JScrollPane notesScrollContainer = new JScrollPane();
- notesScrollContainer.setViewportView(notesText);
- notesScrollContainer.setWheelScrollingEnabled(true);
- notesScrollContainer.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
-
- add(notesScrollContainer, createLayoutConstraints(1, row));
- notesText.setText(alias.getElement().getNotes());
- row++;
-
- add(symbolLabel, createLayoutConstraints(0, row));
- add(symbolText, createLayoutConstraints(1, row));
- symbolText.setText(alias.getElement().getSymbol());
- row++;
-
- add(fullNameLabel, createLayoutConstraints(0, row));
- add(fullNameText, createLayoutConstraints(1, row));
- fullNameText.setText(alias.getElement().getFullName());
- row++;
-
- add(abbreviationLabel, createLayoutConstraints(0, row));
- add(abbreviationText, createLayoutConstraints(1, row));
- abbreviationText.setText(alias.getElement().getAbbreviation());
- row++;
-
- add(formulaLabel, createLayoutConstraints(0, row));
- add(formulaText, createLayoutConstraints(1, row));
- formulaText.setText(alias.getElement().getFormula());
- row++;
-
- add(synonymsLabel, createLayoutConstraints(0, row));
- JScrollPane synonymsScrollPane = new JScrollPane(synonymsList);
- synonymsScrollPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
- add(synonymsScrollPane, createLayoutConstraints(1, row));
- synonymsListModel.removeAllElements();
- for (String string : alias.getElement().getSynonyms()) {
- synonymsListModel.addElement(string);
- }
- row++;
-
- add(formerSymbolsLabel, createLayoutConstraints(0, row));
- JScrollPane formerSymbolsPane = new JScrollPane(formerSymbolsList);
- formerSymbolsPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
- add(formerSymbolsPane, createLayoutConstraints(1, row));
- formerSymbolsListModel.removeAllElements();
- for (String string : alias.getElement().getFormerSymbols()) {
- formerSymbolsListModel.addElement(string);
- }
- row++;
-
- add(miriamDataLabel, createLayoutConstraints(0, row));
- JScrollPane miriamDataPane = new JScrollPane(miriamDataList);
- miriamDataPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
- add(miriamDataPane, createLayoutConstraints(1, row));
- miriamDataListModel.removeAllElements();
- for (MiriamData md : alias.getElement().getMiriamData()) {
- miriamDataListModel.addElement(md);
- }
- row++;
-
- addFooterForAlignment(row++);
- }
-
- /**
- * Adds footer on bottom of the panel to make proper alignments.
- *
- * @param row
- * row in which the last element should appear
- */
- private void addFooterForAlignment(int row) {
- JLabel button = new JLabel("");
- GridBagConstraints c = new GridBagConstraints();
- c.fill = GridBagConstraints.HORIZONTAL;
- c.ipady = 0; // reset to default
- c.weighty = 1.0; // request any extra vertical space
- c.anchor = GridBagConstraints.PAGE_END; // bottom of space
- c.gridx = 1; // aligned with button 2
- c.gridwidth = 2; // 2 columns wide
- c.gridy = row; // third row
- add(button, c);
- }
-
- /**
- * Create constraints for element located on x,y positions in
- * {@link GridBagLayout}.
- *
- * @param x
- * column
- * @param y
- * row
- * @return {@link GridBagConstraints} for object at specified coordinates
- */
- public GridBagConstraints createLayoutConstraints(int x, int y) {
- GridBagConstraints c = new GridBagConstraints();
- c.fill = GridBagConstraints.HORIZONTAL;
- c.anchor = GridBagConstraints.NORTH;
- c.weightx = GRID_RATIO;
- c.gridx = x;
- c.gridy = y;
- return c;
- }
-
- /**
- * Adds listener to be thrown when properties of the {@link #element edited
- * Alias} is changing.
- *
- * @param e
- * {@link ElementModifiedEventListener listener} to add
- */
- public void addAliasModifiedEventListener(ElementModifiedEventListener<Alias> e) {
- aliasListeners.add(e);
- }
-
- /**
- * Adds listener to be thrown when properties of the {@link #element edited
- * Reaction} is changing.
- *
- * @param e
- * {@link ElementModifiedEventListener listener} to add
- */
- public void addReactionModifiedEventListener(ElementModifiedEventListener<Reaction> e) {
- reactionListeners.add(e);
- }
-
- /**
- * Returns {@link Model} where edited element is located.
- *
- * @return {@link Model} where edited element is located
- */
- private Model getModel() {
- if (element instanceof Alias) {
- return ((Alias) element).getModel();
- } else if (element instanceof Reaction) {
- return ((Reaction) element).getModel();
- } else if (element != null) {
- throw new InvalidStateException("Don't know how to handle object of class: " + element.getClass());
- } else {
- return null;
- }
- }
-
- /**
- * Created {@link ObjectEditDialog} that can edit objects of type specified in
- * parameter.
- *
- * @param dialogTitle
- * title that should be used in a dialog
- * @param clazz
- * class of a type of the object to edit
- * @return {@link ObjectEditDialog} that can edit objects of type specified in
- * parameter
- * @param <T>
- * type of the object to edit
- */
- @SuppressWarnings("unchecked")
- private <T> ObjectEditDialog<T> createEditDialog(String dialogTitle, Class<T> clazz) {
- if (String.class.equals(clazz)) {
- return (ObjectEditDialog<T>) new StringEditDialog(null, dialogTitle, dialogTitle);
- } else if (MiriamData.class.equals(clazz)) {
- return (ObjectEditDialog<T>) new MiriamDataDialog(null, dialogTitle, dialogTitle);
- } else {
- throw new NotImplementedException("Don't know how to handle: " + clazz);
- }
- }
-}
+package lcsb.mapviewer.editor.gui.detailstab;
+
+import java.awt.Color;
+import java.awt.Dimension;
+import java.awt.GridBagConstraints;
+import java.awt.GridBagLayout;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.FocusEvent;
+import java.awt.event.FocusListener;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.util.ArrayList;
+import java.util.List;
+
+import javax.swing.DefaultListModel;
+import javax.swing.JButton;
+import javax.swing.JColorChooser;
+import javax.swing.JLabel;
+import javax.swing.JList;
+import javax.swing.JMenuItem;
+import javax.swing.JOptionPane;
+import javax.swing.JPanel;
+import javax.swing.JPopupMenu;
+import javax.swing.JScrollPane;
+import javax.swing.JTextArea;
+import javax.swing.JTextField;
+import javax.swing.text.JTextComponent;
+
+import lcsb.mapviewer.commands.CommandExecutionException;
+import lcsb.mapviewer.commands.ModelCommand;
+import lcsb.mapviewer.common.exception.InvalidArgumentException;
+import lcsb.mapviewer.common.exception.InvalidStateException;
+import lcsb.mapviewer.common.exception.NotImplementedException;
+import lcsb.mapviewer.editor.gui.ElementModifiedEvent;
+import lcsb.mapviewer.editor.gui.ElementModifiedEventListener;
+import lcsb.mapviewer.editor.gui.GuiStyle;
+import lcsb.mapviewer.editor.gui.MiriamDataCellRender;
+import lcsb.mapviewer.editor.gui.objectedit.MiriamDataDialog;
+import lcsb.mapviewer.editor.gui.objectedit.ObjectEditDialog;
+import lcsb.mapviewer.editor.gui.objectedit.StringEditDialog;
+import lcsb.mapviewer.model.map.MiriamData;
+import lcsb.mapviewer.model.map.layout.alias.Alias;
+import lcsb.mapviewer.model.map.layout.alias.CompartmentAlias;
+import lcsb.mapviewer.model.map.layout.alias.ComplexAlias;
+import lcsb.mapviewer.model.map.model.Model;
+import lcsb.mapviewer.model.map.reaction.Reaction;
+
+import org.apache.log4j.Logger;
+
+/**
+ * {@link JPanel} with detail information about selected {@link Alias} or
+ * {@link Reaction}.
+ *
+ * @author Piotr Gawron
+ *
+ */
+public class ElementDetailsPanel extends JPanel {
+
+ /**
+ * X ratio between label and field that contains data in a single row. (take a
+ * look at {@link GridBagConstraints#weightx}).
+ */
+ private static final double GRID_RATIO = 0.5;
+
+ /**
+ *
+ */
+ private static final long serialVersionUID = 1L;
+
+ /**
+ * Default class logger.
+ */
+ private final Logger logger = Logger.getLogger(ElementDetailsPanel.class);
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#name} parameter.
+ */
+ private JLabel nameLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#getElementId()}
+ * parameter.
+ */
+ private JLabel idLabel;
+
+ /**
+ * Label for complex parameter.
+ */
+ private JLabel complexLabel;
+
+ /**
+ * Label for {@link Alias#compartmentAlias} parameter.
+ */
+ private JLabel compartmentLabel;
+
+ /**
+ * Label for {@link Alias#fontSize} parameter.
+ */
+ private JLabel fontSizeLabel;
+
+ /**
+ * Label for {@link Alias#color} parameter.
+ */
+ private JLabel colorLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#notes} parameter.
+ */
+ private JLabel notesLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#symbol} parameter.
+ */
+ private JLabel symbolLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#fullName} parameter.
+ */
+ private JLabel fullNameLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#abbreviation} parameter.
+ */
+ private JLabel abbreviationLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#formula} parameter.
+ */
+ private JLabel formulaLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#synonyms} parameter.
+ */
+ private JLabel synonymsLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#formerSymbols} parameter.
+ */
+ private JLabel formerSymbolsLabel;
+
+ /**
+ * Label for {@link lcsb.mapviewer.model.map.Element#symbol} parameter.
+ */
+ private JLabel miriamDataLabel;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#name}
+ * parameter.
+ */
+ private JTextField nameText;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#name}
+ * parameter.
+ */
+ private JTextField idText;
+
+ /**
+ * {@link JTextField} for complex parameter.
+ */
+ private JTextField complexText;
+
+ /**
+ * {@link JTextField} for {@link Alias#compartmentAlias} parameter.
+ */
+ private JTextField compartmentText;
+
+ /**
+ * {@link JTextField} for {@link Alias#fontSize} parameter.
+ */
+ private JTextField fontSizeText;
+
+ /**
+ * {@link JTextField} for {@link Alias#color} parameter.
+ */
+ private JButton colorButton;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#notes}
+ * parameter.
+ */
+ private JTextArea notesText;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#symbol}
+ * parameter.
+ */
+ private JTextField symbolText;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#fullName}
+ * parameter.
+ */
+ private JTextField fullNameText;
+
+ /**
+ * {@link JTextField} for
+ * {@link lcsb.mapviewer.model.map.Element#abbreviation} parameter.
+ */
+ private JTextField abbreviationText;
+
+ /**
+ * {@link JTextField} for {@link lcsb.mapviewer.model.map.Element#formula}
+ * parameter.
+ */
+ private JTextField formulaText;
+
+ /**
+ * {@link JList} for {@link lcsb.mapviewer.model.map.Element#synonyms}
+ * parameter.
+ */
+ private JList<String> synonymsList;
+
+ /**
+ * {@link JList} for
+ * {@link lcsb.mapviewer.model.map.Element#formerSymbols} parameter.
+ */
+ private JList<String> formerSymbolsList;
+
+ /**
+ * {@link JList} for {@link lcsb.mapviewer.model.map.Element#miriamData}
+ * parameter.
+ */
+ private JList<MiriamData> miriamDataList;
+
+ /**
+ * List of synonyms in {@link lcsb.mapviewer.model.map.Element#synonyms}.
+ *
+ * @see {@link #synonymsList}
+ */
+ private DefaultListModel<String> synonymsListModel = new DefaultListModel<>();
+
+ /**
+ * List of synonyms in {@link lcsb.mapviewer.model.map.Element#formerSymbols}.
+ *
+ * @see {@link #formerSymbolsList}
+ */
+ private DefaultListModel<String> formerSymbolsListModel = new DefaultListModel<>();
+
+ /**
+ * List of synonyms in {@link lcsb.mapviewer.model.map.Element#miriamData}.
+ *
+ * @see {@link #miriamDataList}
+ */
+ private DefaultListModel<MiriamData> miriamDataListModel = new DefaultListModel<>();
+
+ /**
+ * {@link Alias} or {@link Reaction} that is currently selected.
+ */
+ private Object element;
+
+ /**
+ * List of listeners that should be thrown when some properties of selected
+ * {@link Alias} is changed.
+ */
+ private List<ElementModifiedEventListener<Alias>> aliasListeners = new ArrayList<>();
+
+ /**
+ * List of listeners that should be thrown when some properties of selected
+ * {@link Reaction} is changed.
+ */
+ private List<ElementModifiedEventListener<Reaction>> reactionListeners = new ArrayList<>();
+
+ /**
+ * This flag value is set when data in the panel is updated from newly
+ * selected element.
+ */
+ private boolean updatingData = false;
+
+ /**
+ * Default constructor.
+ */
+ public ElementDetailsPanel() {
+ GridBagLayout gridLayout = new GridBagLayout();
+ setLayout(gridLayout);
+ setPreferredSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH, GuiStyle.DETAIL_PANEL_HEIGHT));
+
+ nameLabel = new JLabel("Name: ");
+ idLabel = new JLabel("ID: ");
+ complexLabel = new JLabel("Parent complex: ");
+ compartmentLabel = new JLabel("Parent compartment: ");
+ fontSizeLabel = new JLabel("Font size: ");
+ colorLabel = new JLabel("Color: ");
+ notesLabel = new JLabel("Notes: ");
+ symbolLabel = new JLabel("Symbol: ");
+ fullNameLabel = new JLabel("Full name: ");
+ abbreviationLabel = new JLabel("Abbreviation: ");
+ formulaLabel = new JLabel("Formula: ");
+ synonymsLabel = new JLabel("Synonyms: ");
+ formerSymbolsLabel = new JLabel("Former symbols: ");
+ miriamDataLabel = new JLabel("Annotations: ");
+
+ nameText = new JTextField();
+ idText = new JTextField();
+ idText.setEditable(false);
+ idText.setEnabled(false);
+ complexText = new JTextField();
+ complexText.setEditable(false);
+ complexText.setEnabled(false);
+ compartmentText = new JTextField();
+ compartmentText.setEditable(false);
+ compartmentText.setEnabled(false);
+ fontSizeText = new JTextField();
+ colorButton = new JButton("Change");
+ notesText = new JTextArea();
+ notesText.setLineWrap(true);
+ notesText.setWrapStyleWord(true);
+ symbolText = new JTextField();
+ fullNameText = new JTextField();
+ abbreviationText = new JTextField();
+ formulaText = new JTextField();
+ synonymsList = new JList<>(synonymsListModel);
+ formerSymbolsList = new JList<>(formerSymbolsListModel);
+ miriamDataList = new JList<>(miriamDataListModel);
+ miriamDataList.setCellRenderer(new MiriamDataCellRender());
+
+ assignCommandToField(nameText, new CreateChangeNameCommand(nameText));
+ assignCommandToField(fontSizeText, new CreateChangeFontSizeCommand(fontSizeText));
+ assignCommandToField(notesText, new CreateChangeNotesCommand(notesText));
+ assignCommandToField(symbolText, new CreateChangeSymbolCommand(symbolText));
+ assignCommandToField(fullNameText, new CreateChangeFullNameCommand(fullNameText));
+ assignCommandToField(abbreviationText, new CreateChangeAbbreviationCommand(abbreviationText));
+ assignCommandToField(formulaText, new CreateChangeFormulaCommand(formulaText));
+ assignColorCommandToField(colorButton, new CreateChangeColorCommand(colorButton));
+ assignCommandToList(synonymsList, new CreateChangeSynonymCommand(synonymsList), "Synonym", String.class);
+ assignCommandToList(formerSymbolsList, new CreateChangeFormerSymbolCommand(formerSymbolsList), "Former symbol", String.class);
+ assignCommandToList(miriamDataList, new CreateChangeMiriamDataCommand(miriamDataList), "Miriam data", MiriamData.class);
+ }
+
+ /**
+ * Creates listener that will handle changes on list parameter. It assigns
+ * {@link CreateListPropertyChangeCommand<T>} object that will create a proper
+ * {@link ModelCommand} when changes are made to the parameter field.
+ *
+ * @param list
+ * component where changes can be made
+ * @param dialogTitle
+ * title of the dialog used for editing property
+ * @param clazz
+ * class type of the property
+ * @param createCommandObject
+ * object that will create apropriate {@link ModelCommand}
+ * @param <T>
+ * type of the objects included in the parameter list
+ */
+ private <T> void assignCommandToList(JList<T> list, CreateListPropertyChangeCommand<T> createCommandObject, String dialogTitle, Class<T> clazz) {
+ list.addMouseListener(new MouseAdapter() {
+ @Override
+ public void mousePressed(MouseEvent e) {
+ logger.debug("Mouse pressed");
+ if (e.isPopupTrigger()) {
+ doPop(e);
+ }
+ }
+
+ @Override
+ public void mouseReleased(MouseEvent e) {
+ if (e.isPopupTrigger()) {
+ doPop(e);
+ }
+ }
+
+ private void doPop(MouseEvent e) {
+ JPopupMenu menu = new JPopupMenu();
+ JMenuItem addItem = new JMenuItem("Add");
+ menu.add(addItem);
+ addItem.addActionListener(new ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e) {
+ ObjectEditDialog<T> editDialog = createEditDialog(dialogTitle, clazz);
+ editDialog.addOkListener(new ElementModifiedEventListener<T>() {
+
+ @Override
+ public void actionPerformed(ElementModifiedEvent<T> e) throws CommandExecutionException {
+ T s = e.getElement();
+ List<T> values = new ArrayList<>();
+ values.add(s);
+ ModelCommand modelCommand = createCommandObject.createAddCommand(getModel(), (Alias) element, values);
+ processCommand(modelCommand);
+ ((DefaultListModel<T>) list.getModel()).addElement(s);
+ }
+ });
+ editDialog.editObject(null);
+ }
+
+ });
+ if (list.getSelectedIndices().length == 1) {
+ JMenuItem editItem = new JMenuItem("Edit");
+ menu.add(editItem);
+ editItem.addActionListener(new ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e) {
+ ObjectEditDialog<T> editDialog = createEditDialog(dialogTitle, clazz);
+ editDialog.addOkListener(new ElementModifiedEventListener<T>() {
+ @Override
+ public void actionPerformed(ElementModifiedEvent<T> e) throws CommandExecutionException {
+ T s = e.getElement();
+ ModelCommand modelCommand = createCommandObject.createChangeCommand(getModel(), (Alias) element, s, list.getSelectedValue());
+ processCommand(modelCommand);
+ ((DefaultListModel<T>) list.getModel()).set(list.getSelectedIndices()[0], s);
+ }
+ });
+ editDialog.editObject(list.getSelectedValue());
+ }
+ });
+ }
+ if (list.getSelectedIndices().length > 0) {
+ JMenuItem removeItem = new JMenuItem("Remove");
+ menu.add(removeItem);
+ removeItem.addActionListener(new ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e) {
+ List<T> elements = new ArrayList<>();
+ for (T string : list.getSelectedValuesList()) {
+ elements.add(string);
+ }
+ ModelCommand modelCommand = createCommandObject.createRemoveCommand(getModel(), (Alias) element, elements);
+ try {
+ processCommand(modelCommand);
+ for (T string : elements) {
+ ((DefaultListModel<T>) list.getModel()).removeElement(string);
+ }
+ } catch (CommandExecutionException exception) {
+ JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
+ }
+ }
+ });
+ }
+ menu.show(e.getComponent(), e.getX(), e.getY());
+ }
+ });
+ }
+
+ /**
+ * Creates listener that will handle changes on color button parameter. It
+ * assigns {@link CreateListPropertyChangeCommand<T>} object that will create
+ * a proper {@link ModelCommand} when changes are made to the parameter field.
+ *
+ * @param colorButton
+ * component where changes can be made
+ * @param createCommandObject
+ * object that will create apropriate {@link ModelCommand}
+ */
+ private void assignColorCommandToField(JButton colorButton, CreatePropertyChangeCommand createCommandObject) {
+ colorButton.addActionListener(new ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e) {
+ if (!updatingData && element != null) {
+ Color newColor = JColorChooser.showDialog(ElementDetailsPanel.this, "Choose Color", colorButton.getBackground());
+ if (newColor != null) {
+ colorButton.setBackground(newColor);
+ ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
+ try {
+ processCommand(modelCommand);
+ } catch (CommandExecutionException exception) {
+ JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
+ }
+ }
+ }
+ }
+
+ });
+ }
+
+ /**
+ * Executes parameter {@link ModelCommand} and fires appropraite listeners.
+ *
+ * @param modelCommand
+ * command to be executed
+ * @throws CommandExecutionException
+ * thrown when modelCommand cannot be executed due to some
+ * problematic input data
+ */
+ public void processCommand(ModelCommand modelCommand) throws CommandExecutionException {
+ modelCommand.execute();
+ if (modelCommand != null) {
+ if (element instanceof Alias) {
+ ElementModifiedEvent<Alias> event = new ElementModifiedEvent<Alias>(this, (Alias) element, modelCommand);
+ for (ElementModifiedEventListener<Alias> listener : aliasListeners) {
+ listener.actionPerformed(event);
+ }
+ } else if (element instanceof Reaction) {
+ ElementModifiedEvent<Reaction> event = new ElementModifiedEvent<Reaction>(this, (Reaction) element, modelCommand);
+ for (ElementModifiedEventListener<Reaction> listener : reactionListeners) {
+ listener.actionPerformed(event);
+ }
+ } else {
+ throw new NotImplementedException("Don't know how to handle: " + element.getClass());
+ }
+ }
+ }
+
+ /**
+ * Creates listener that will handle changes on {@link JTextComponent}
+ * parameter. It assigns {@link CreateListPropertyChangeCommand<T>} object
+ * that will create a proper {@link ModelCommand} when changes are made to the
+ * parameter field.
+ *
+ * @param field
+ * component where changes can be made
+ * @param createCommandObject
+ * object that will create apropriate {@link ModelCommand}
+ */
+ private void assignCommandToField(JTextComponent field, CreatePropertyChangeCommand createCommandObject) {
+ field.addFocusListener(new FocusListener() {
+ public void focusGained(FocusEvent e) {
+ }
+
+ public void focusLost(FocusEvent e) {
+ if (!updatingData && element != null) {
+ ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
+ try {
+ processCommand(modelCommand);
+ } catch (CommandExecutionException exception) {
+ JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
+ }
+ }
+ }
+ });
+ if (field instanceof JTextField) {
+ ((JTextField) field).addActionListener(new ActionListener() {
+ @Override
+ public void actionPerformed(ActionEvent e) {
+ if (!updatingData && element != null) {
+ ModelCommand modelCommand = createCommandObject.createCommand(getModel(), (Alias) element);
+ try {
+ processCommand(modelCommand);
+ } catch (CommandExecutionException exception) {
+ JOptionPane.showMessageDialog(null, exception.getMessage(), "Error", JOptionPane.ERROR_MESSAGE);
+ }
+ }
+ }
+ });
+ }
+
+ }
+
+ /**
+ * Sets {@link #element}.
+ *
+ * @param object
+ * new {@link #element} value
+ */
+ public void setElement(Object object) {
+ this.element = object;
+
+ updateData(object);
+ }
+
+ /**
+ * Updates data in the panel using parameter object as a data source.
+ *
+ * @param object
+ * object for which data details should be available
+ */
+ private void updateData(Object object) {
+ updatingData = true;
+ removeAll();
+ try {
+ if (object instanceof Alias) {
+ createAliasPanel((Alias) object);
+ } else if (object instanceof Reaction) {
+ createReactionPanel((Reaction) object);
+ } else if (object != null) {
+ throw new InvalidArgumentException("Cannot provide details for object: " + object);
+ }
+ validate();
+ repaint();
+ } finally {
+ updatingData = false;
+ }
+
+ }
+
+ /**
+ * Creates property details panel for reaction.
+ *
+ * @param object
+ * reaction for which panel will be created
+ */
+ private void createReactionPanel(Reaction object) {
+ throw new NotImplementedException();
+
+ }
+
+ /**
+ * Creates property details panel for alias.
+ *
+ * @param alias
+ * {@link Alias} for which panel will be created
+ */
+ private void createAliasPanel(Alias alias) {
+ int row = 0;
+ add(nameLabel, createLayoutConstraints(0, row));
+ add(nameText, createLayoutConstraints(1, row));
+ nameText.setText(alias.getName());
+ row++;
+
+ add(idLabel, createLayoutConstraints(0, row));
+ add(idText, createLayoutConstraints(1, row));
+ idText.setText(alias.getAliasId());
+ row++;
+
+ add(complexLabel, createLayoutConstraints(0, row));
+ add(complexText, createLayoutConstraints(1, row));
+ if (alias.getParent() instanceof ComplexAlias) {
+ complexText.setText(alias.getParent().getAliasId());
+ } else {
+ complexText.setText("N/A");
+ }
+ row++;
+
+ add(compartmentLabel, createLayoutConstraints(0, row));
+ add(compartmentText, createLayoutConstraints(1, row));
+ if (alias.getCompartmentAlias() instanceof CompartmentAlias) {
+ compartmentText.setText(alias.getCompartmentAlias().getAliasId());
+ } else {
+ compartmentText.setText("N/A");
+ }
+ row++;
+
+ add(fontSizeLabel, createLayoutConstraints(0, row));
+ add(fontSizeText, createLayoutConstraints(1, row));
+ fontSizeText.setText(alias.getFontSize() + "");
+ row++;
+
+ add(colorLabel, createLayoutConstraints(0, row));
+ add(colorButton, createLayoutConstraints(1, row));
+ colorButton.setBackground(alias.getColor());
+ row++;
+
+ add(notesLabel, createLayoutConstraints(0, row));
+ JScrollPane notesScrollContainer = new JScrollPane();
+ notesScrollContainer.setViewportView(notesText);
+ notesScrollContainer.setWheelScrollingEnabled(true);
+ notesScrollContainer.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
+
+ add(notesScrollContainer, createLayoutConstraints(1, row));
+ notesText.setText(alias.getNotes());
+ row++;
+
+ add(symbolLabel, createLayoutConstraints(0, row));
+ add(symbolText, createLayoutConstraints(1, row));
+ symbolText.setText(alias.getSymbol());
+ row++;
+
+ add(fullNameLabel, createLayoutConstraints(0, row));
+ add(fullNameText, createLayoutConstraints(1, row));
+ fullNameText.setText(alias.getFullName());
+ row++;
+
+ add(abbreviationLabel, createLayoutConstraints(0, row));
+ add(abbreviationText, createLayoutConstraints(1, row));
+ abbreviationText.setText(alias.getAbbreviation());
+ row++;
+
+ add(formulaLabel, createLayoutConstraints(0, row));
+ add(formulaText, createLayoutConstraints(1, row));
+ formulaText.setText(alias.getFormula());
+ row++;
+
+ add(synonymsLabel, createLayoutConstraints(0, row));
+ JScrollPane synonymsScrollPane = new JScrollPane(synonymsList);
+ synonymsScrollPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
+ add(synonymsScrollPane, createLayoutConstraints(1, row));
+ synonymsListModel.removeAllElements();
+ for (String string : alias.getSynonyms()) {
+ synonymsListModel.addElement(string);
+ }
+ row++;
+
+ add(formerSymbolsLabel, createLayoutConstraints(0, row));
+ JScrollPane formerSymbolsPane = new JScrollPane(formerSymbolsList);
+ formerSymbolsPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
+ add(formerSymbolsPane, createLayoutConstraints(1, row));
+ formerSymbolsListModel.removeAllElements();
+ for (String string : alias.getFormerSymbols()) {
+ formerSymbolsListModel.addElement(string);
+ }
+ row++;
+
+ add(miriamDataLabel, createLayoutConstraints(0, row));
+ JScrollPane miriamDataPane = new JScrollPane(miriamDataList);
+ miriamDataPane.setMinimumSize(new Dimension(GuiStyle.DETAIL_PANEL_WIDTH / 2, GuiStyle.SCROLL_LIST_HEIGHT));
+ add(miriamDataPane, createLayoutConstraints(1, row));
+ miriamDataListModel.removeAllElements();
+ for (MiriamData md : alias.getMiriamData()) {
+ miriamDataListModel.addElement(md);
+ }
+ row++;
+
+ addFooterForAlignment(row++);
+ }
+
+ /**
+ * Adds footer on bottom of the panel to make proper alignments.
+ *
+ * @param row
+ * row in which the last element should appear
+ */
+ private void addFooterForAlignment(int row) {
+ JLabel button = new JLabel("");
+ GridBagConstraints c = new GridBagConstraints();
+ c.fill = GridBagConstraints.HORIZONTAL;
+ c.ipady = 0; // reset to default
+ c.weighty = 1.0; // request any extra vertical space
+ c.anchor = GridBagConstraints.PAGE_END; // bottom of space
+ c.gridx = 1; // aligned with button 2
+ c.gridwidth = 2; // 2 columns wide
+ c.gridy = row; // third row
+ add(button, c);
+ }
+
+ /**
+ * Create constraints for element located on x,y positions in
+ * {@link GridBagLayout}.
+ *
+ * @param x
+ * column
+ * @param y
+ * row
+ * @return {@link GridBagConstraints} for object at specified coordinates
+ */
+ public GridBagConstraints createLayoutConstraints(int x, int y) {
+ GridBagConstraints c = new GridBagConstraints();
+ c.fill = GridBagConstraints.HORIZONTAL;
+ c.anchor = GridBagConstraints.NORTH;
+ c.weightx = GRID_RATIO;
+ c.gridx = x;
+ c.gridy = y;
+ return c;
+ }
+
+ /**
+ * Adds listener to be thrown when properties of the {@link #element edited
+ * Alias} is changing.
+ *
+ * @param e
+ * {@link ElementModifiedEventListener listener} to add
+ */
+ public void addAliasModifiedEventListener(ElementModifiedEventListener<Alias> e) {
+ aliasListeners.add(e);
+ }
+
+ /**
+ * Adds listener to be thrown when properties of the {@link #element edited
+ * Reaction} is changing.
+ *
+ * @param e
+ * {@link ElementModifiedEventListener listener} to add
+ */
+ public void addReactionModifiedEventListener(ElementModifiedEventListener<Reaction> e) {
+ reactionListeners.add(e);
+ }
+
+ /**
+ * Returns {@link Model} where edited element is located.
+ *
+ * @return {@link Model} where edited element is located
+ */
+ private Model getModel() {
+ if (element instanceof Alias) {
+ return ((Alias) element).getModel();
+ } else if (element instanceof Reaction) {
+ return ((Reaction) element).getModel();
+ } else if (element != null) {
+ throw new InvalidStateException("Don't know how to handle object of class: " + element.getClass());
+ } else {
+ return null;
+ }
+ }
+
+ /**
+ * Created {@link ObjectEditDialog} that can edit objects of type specified in
+ * parameter.
+ *
+ * @param dialogTitle
+ * title that should be used in a dialog
+ * @param clazz
+ * class of a type of the object to edit
+ * @return {@link ObjectEditDialog} that can edit objects of type specified in
+ * parameter
+ * @param <T>
+ * type of the object to edit
+ */
+ @SuppressWarnings("unchecked")
+ private <T> ObjectEditDialog<T> createEditDialog(String dialogTitle, Class<T> clazz) {
+ if (String.class.equals(clazz)) {
+ return (ObjectEditDialog<T>) new StringEditDialog(null, dialogTitle, dialogTitle);
+ } else if (MiriamData.class.equals(clazz)) {
+ return (ObjectEditDialog<T>) new MiriamDataDialog(null, dialogTitle, dialogTitle);
+ } else {
+ throw new NotImplementedException("Don't know how to handle: " + clazz);
+ }
+ }
+}
--
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