From 48fb447ce42a6df6ff0b5ca268e3af636963d39f Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Fri, 6 Jul 2018 11:56:32 +0200
Subject: [PATCH] test modified to use mockito
---
.../species/field/AntisenseRnaRegionTest.java | 303 +++++++++---------
1 file changed, 150 insertions(+), 153 deletions(-)
diff --git a/model/src/test/java/lcsb/mapviewer/model/map/species/field/AntisenseRnaRegionTest.java b/model/src/test/java/lcsb/mapviewer/model/map/species/field/AntisenseRnaRegionTest.java
index 2821caabaf..a84a65a853 100644
--- a/model/src/test/java/lcsb/mapviewer/model/map/species/field/AntisenseRnaRegionTest.java
+++ b/model/src/test/java/lcsb/mapviewer/model/map/species/field/AntisenseRnaRegionTest.java
@@ -8,166 +8,163 @@ import org.apache.commons.lang3.SerializationUtils;
import org.junit.After;
import org.junit.Before;
import org.junit.Test;
+import org.mockito.Mockito;
import lcsb.mapviewer.common.Configuration;
import lcsb.mapviewer.common.exception.InvalidArgumentException;
import lcsb.mapviewer.common.exception.NotImplementedException;
+import lcsb.mapviewer.model.map.modifier.Catalysis;
import lcsb.mapviewer.model.map.species.AntisenseRna;
+import lcsb.mapviewer.model.map.species.Drug;
public class AntisenseRnaRegionTest {
- @Before
- public void setUp() throws Exception {
- }
-
- @After
- public void tearDown() throws Exception {
- }
-
- @Test
- public void testSerialization() {
- try {
- SerializationUtils.serialize(new AntisenseRnaRegion());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testConstructor1() {
- try {
- AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
- AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion(antisenseRna);
- assertNotNull(antisenseRna2);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testUpdate() {
- try {
- AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
- antisenseRna.setState(ModificationState.EMPTY);
- antisenseRna.setName("as");
- antisenseRna.setPos(3.0);
- AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion();
- antisenseRna2.update(antisenseRna);
- assertEquals(antisenseRna.getState(), antisenseRna2.getState());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testInvalidUpdate() {
- try {
- AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
- AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion();
- antisenseRna.setIdAntisenseRnaRegion("@1");
- antisenseRna2.setIdAntisenseRnaRegion("@");
- antisenseRna2.update(antisenseRna);
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testGetters() {
- try {
- AntisenseRnaRegion region = new AntisenseRnaRegion(new AntisenseRnaRegion());
- int id = 91;
- AntisenseRna species = new AntisenseRna("id");
- double pos = 4.6;
- double size = 5.3;
- AntisenseRnaRegionType type = AntisenseRnaRegionType.CODING_REGION;
- String name = "nam";
- String idAntisenseRnaRegion = "iddd";
-
- region.setId(id);
- region.setSpecies(species);
- region.setPos(pos);
- region.setSize(size);
- region.setType(type);
- region.setName(name);
- region.setIdAntisenseRnaRegion(idAntisenseRnaRegion);
- region.setState(ModificationState.ACETYLATED);
-
- assertEquals(id, region.getId());
- assertEquals(species, region.getSpecies());
- assertEquals(pos, region.getPos(), Configuration.EPSILON);
- assertEquals(size, region.getSize(), Configuration.EPSILON);
- assertEquals(type, region.getType());
- assertEquals(name, region.getName());
- assertEquals(idAntisenseRnaRegion, region.getIdAntisenseRnaRegion());
-
- assertEquals(ModificationState.ACETYLATED, region.getState());
-
- try {
- region.setSize("text");
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- }
-
- try {
- region.setPos("text");
- fail("Exception expected");
- } catch (InvalidArgumentException e) {
- }
-
- region.setSize("1.0");
- region.setPos("1.0");
- assertEquals(1.0, region.getPos(), Configuration.EPSILON);
- assertEquals(1.0, region.getSize(), Configuration.EPSILON);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testToString() {
- try {
- assertNotNull(new AntisenseRnaRegion().toString());
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testCopy() {
- try {
- AntisenseRnaRegion degraded = new AntisenseRnaRegion().copy();
- assertNotNull(degraded);
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
-
- @Test
- public void testInvalidCopy() {
- try {
- new AntisenseRnaRegion() {
-
- /**
- *
- */
- private static final long serialVersionUID = 1L;
- }.copy();
- fail("Exception expected");
- } catch (NotImplementedException e) {
- } catch (Exception e) {
- e.printStackTrace();
- throw e;
- }
- }
+ @Before
+ public void setUp() throws Exception {
+ }
+
+ @After
+ public void tearDown() throws Exception {
+ }
+
+ @Test
+ public void testSerialization() {
+ try {
+ SerializationUtils.serialize(new AntisenseRnaRegion());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testConstructor1() {
+ try {
+ AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
+ AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion(antisenseRna);
+ assertNotNull(antisenseRna2);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testUpdate() {
+ try {
+ AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
+ antisenseRna.setState(ModificationState.EMPTY);
+ antisenseRna.setName("as");
+ antisenseRna.setPos(3.0);
+ AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion();
+ antisenseRna2.update(antisenseRna);
+ assertEquals(antisenseRna.getState(), antisenseRna2.getState());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testInvalidUpdate() {
+ try {
+ AntisenseRnaRegion antisenseRna = new AntisenseRnaRegion();
+ AntisenseRnaRegion antisenseRna2 = new AntisenseRnaRegion();
+ antisenseRna.setIdAntisenseRnaRegion("@1");
+ antisenseRna2.setIdAntisenseRnaRegion("@");
+ antisenseRna2.update(antisenseRna);
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testGetters() {
+ try {
+ AntisenseRnaRegion region = new AntisenseRnaRegion(new AntisenseRnaRegion());
+ int id = 91;
+ AntisenseRna species = new AntisenseRna("id");
+ double pos = 4.6;
+ double size = 5.3;
+ AntisenseRnaRegionType type = AntisenseRnaRegionType.CODING_REGION;
+ String name = "nam";
+ String idAntisenseRnaRegion = "iddd";
+
+ region.setId(id);
+ region.setSpecies(species);
+ region.setPos(pos);
+ region.setSize(size);
+ region.setType(type);
+ region.setName(name);
+ region.setIdAntisenseRnaRegion(idAntisenseRnaRegion);
+ region.setState(ModificationState.ACETYLATED);
+
+ assertEquals(id, region.getId());
+ assertEquals(species, region.getSpecies());
+ assertEquals(pos, region.getPos(), Configuration.EPSILON);
+ assertEquals(size, region.getSize(), Configuration.EPSILON);
+ assertEquals(type, region.getType());
+ assertEquals(name, region.getName());
+ assertEquals(idAntisenseRnaRegion, region.getIdAntisenseRnaRegion());
+
+ assertEquals(ModificationState.ACETYLATED, region.getState());
+
+ try {
+ region.setSize("text");
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ }
+
+ try {
+ region.setPos("text");
+ fail("Exception expected");
+ } catch (InvalidArgumentException e) {
+ }
+
+ region.setSize("1.0");
+ region.setPos("1.0");
+ assertEquals(1.0, region.getPos(), Configuration.EPSILON);
+ assertEquals(1.0, region.getSize(), Configuration.EPSILON);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testToString() {
+ try {
+ assertNotNull(new AntisenseRnaRegion().toString());
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testCopy() {
+ try {
+ AntisenseRnaRegion degraded = new AntisenseRnaRegion().copy();
+ assertNotNull(degraded);
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
+
+ @Test
+ public void testInvalidCopy() {
+ try {
+ Mockito.mock(AntisenseRnaRegion.class, Mockito.CALLS_REAL_METHODS).copy();
+ fail("Exception expected");
+ } catch (NotImplementedException e) {
+ } catch (Exception e) {
+ e.printStackTrace();
+ throw e;
+ }
+ }
}
--
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