diff --git a/rest-api/src/main/java/lcsb/mapviewer/api/BaseRestImpl.java b/rest-api/src/main/java/lcsb/mapviewer/api/BaseRestImpl.java index 44bac7681ebb183629407e94e2bc9f52ac4e89c7..05dada655c26ccf3f34194167d1469f52a3f66c2 100644 --- a/rest-api/src/main/java/lcsb/mapviewer/api/BaseRestImpl.java +++ b/rest-api/src/main/java/lcsb/mapviewer/api/BaseRestImpl.java @@ -30,7 +30,6 @@ import lcsb.mapviewer.annotation.data.Target; import lcsb.mapviewer.annotation.services.MiriamConnector; import lcsb.mapviewer.annotation.services.PubmedParser; import lcsb.mapviewer.annotation.services.PubmedSearchException; -import lcsb.mapviewer.annotation.services.annotators.ElementAnnotator; import lcsb.mapviewer.common.comparator.StringComparator; import lcsb.mapviewer.common.exception.InvalidArgumentException; import lcsb.mapviewer.common.exception.InvalidStateException; diff --git a/rest-api/src/main/java/lcsb/mapviewer/api/projects/models/bioEntities/reactions/ReactionsRestImpl.java b/rest-api/src/main/java/lcsb/mapviewer/api/projects/models/bioEntities/reactions/ReactionsRestImpl.java index c9e9ca5e923414bb8248b82f59ae35d77f9d3283..a548d87c23e90f3190c4aab32874b7ff513cb826 100644 --- a/rest-api/src/main/java/lcsb/mapviewer/api/projects/models/bioEntities/reactions/ReactionsRestImpl.java +++ b/rest-api/src/main/java/lcsb/mapviewer/api/projects/models/bioEntities/reactions/ReactionsRestImpl.java @@ -3,8 +3,8 @@ package lcsb.mapviewer.api.projects.models.bioEntities.reactions; import java.awt.geom.Line2D; import java.io.IOException; import java.util.ArrayList; -import java.util.LinkedHashSet; import java.util.LinkedHashMap; +import java.util.LinkedHashSet; import java.util.List; import java.util.Map; import java.util.Set; @@ -13,7 +13,6 @@ import java.util.TreeMap; import javax.xml.transform.TransformerException; import org.apache.log4j.Logger; -import org.springframework.beans.factory.annotation.Autowired; import org.springframework.stereotype.Service; import org.springframework.transaction.annotation.Transactional; @@ -35,8 +34,6 @@ import lcsb.mapviewer.model.map.reaction.ReactionNode; import lcsb.mapviewer.model.map.species.Element; import lcsb.mapviewer.services.SecurityException; import lcsb.mapviewer.services.UserAccessException; -import lcsb.mapviewer.services.interfaces.IModelService; -import lcsb.mapviewer.services.interfaces.IUserService; @Transactional @Service @@ -45,34 +42,9 @@ public class ReactionsRestImpl extends BaseRestImpl { /** * Default class logger. */ - @SuppressWarnings("unused") private Logger logger = Logger.getLogger(ReactionsRestImpl.class); - private IUserService userService; - - private IModelService modelService; - - @Autowired - public ReactionsRestImpl(IUserService userService, IModelService modelService) { - this.userService = userService; - this.modelService = modelService; - } - - /** - * @return the userService - * @see #userService - */ - public IUserService getUserService() { - return userService; - } - - /** - * @param userService - * the userService to set - * @see #userService - */ - public void setUserService(IUserService userService) { - this.userService = userService; + public ReactionsRestImpl() { } public List<Map<String, Object>> getReactions(String projectId, String id, String columns, String modelId, @@ -212,12 +184,12 @@ public class ReactionsRestImpl extends BaseRestImpl { } } else if (reactant instanceof Product) { endLines.add(lines.get(lines.size() - 1)); - for (int i = 0; i < lines.size()-1; i++) { + for (int i = 0; i < lines.size() - 1; i++) { middleLines.add(lines.get(i)); } } else if (reactant instanceof Modifier) { middleLines.add(lines.get(lines.size() - 1)); - for (int i = 0; i < lines.size()-1; i++) { + for (int i = 0; i < lines.size() - 1; i++) { middleLines.add(lines.get(i)); } } else { @@ -300,22 +272,4 @@ public class ReactionsRestImpl extends BaseRestImpl { } return columnsSet; } - - /** - * @return the modelService - * @see #modelService - */ - public IModelService getModelService() { - return modelService; - } - - /** - * @param modelService - * the modelService to set - * @see #modelService - */ - public void setModelService(IModelService modelService) { - this.modelService = modelService; - } - }