From a121588dfd083662659e96c32be2f075ffd5e924 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Wed, 26 Jul 2017 11:03:34 +0200
Subject: [PATCH] when data in database is wrong exception is properly handled
---
.../mapviewer/annotation/services/ChemicalParser.java | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/annotation/src/main/java/lcsb/mapviewer/annotation/services/ChemicalParser.java b/annotation/src/main/java/lcsb/mapviewer/annotation/services/ChemicalParser.java
index 74e38ec3bf..df03d1175c 100644
--- a/annotation/src/main/java/lcsb/mapviewer/annotation/services/ChemicalParser.java
+++ b/annotation/src/main/java/lcsb/mapviewer/annotation/services/ChemicalParser.java
@@ -12,6 +12,7 @@ import java.util.Set;
import java.util.regex.Matcher;
import java.util.regex.Pattern;
+import org.apache.commons.lang3.SerializationException;
import org.apache.log4j.Logger;
import org.springframework.beans.factory.annotation.Autowired;
import org.w3c.dom.Node;
@@ -353,8 +354,12 @@ public class ChemicalParser extends CachableInterface implements IExternalServic
// look for chemical in the cache
Node chemicalNode = super.getCacheNode(getIdentifier(diseaseID, chemicalId));
if (chemicalNode != null && chemicalNode.hasChildNodes()) {
- result = chemicalSerializer.xmlToObject(chemicalNode);
- return result;
+ try {
+ result = chemicalSerializer.xmlToObject(chemicalNode);
+ return result;
+ } catch (SerializationException e) {
+ logger.error(e, e);
+ }
}
try {
String diseaseQuery = DISEASE_URL + diseaseID.getResource();
--
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