diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/model/ReactomeRegulationType.java b/reactome/src/main/java/lcsb/mapviewer/reactome/model/ReactomeRegulationType.java deleted file mode 100644 index a7588d2284a89380375025faeeddc21d48b2b3af..0000000000000000000000000000000000000000 --- a/reactome/src/main/java/lcsb/mapviewer/reactome/model/ReactomeRegulationType.java +++ /dev/null @@ -1,12 +0,0 @@ -package lcsb.mapviewer.reactome.model; - -/** - * Object representing Reactome <a href= - * "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=RegulationType" - * >RegulationType</a> object. - * - * @author Piotr Gawron - * - */ -public class ReactomeRegulationType extends ReactomeDatabaseObject { -} diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java deleted file mode 100644 index 446afe2e8911259d6795e826e224863a6d0f4126..0000000000000000000000000000000000000000 --- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/ReactomeRegulationTypeParser.java +++ /dev/null @@ -1,24 +0,0 @@ -package lcsb.mapviewer.reactome.xml; - -import lcsb.mapviewer.reactome.model.ReactomeRegulationType; -import lcsb.mapviewer.reactome.xml.columnParser.RegulationTypeColumnParser; - -/** - * Parser for reactome xml retrieved from <a href= - * "http://reactome.org/ReactomeRESTfulAPI/ReactomeRESTFulAPI.html" - * >Reactome API</a> for <a href= - * "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=RegulationType" - * >RegulationType</a> object. - * - * @author Piotr Gawron - * - */ -public class ReactomeRegulationTypeParser extends ReactomeNodeParser<ReactomeRegulationType> { - - /** - * Default constructor. - */ - public ReactomeRegulationTypeParser() { - super(ReactomeRegulationType.class, RegulationTypeColumnParser.class); - } -} diff --git a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/columnParser/RegulationTypeColumnParser.java b/reactome/src/main/java/lcsb/mapviewer/reactome/xml/columnParser/RegulationTypeColumnParser.java deleted file mode 100644 index 5e21b8a7c411207505c97f300d7d22634fb522e8..0000000000000000000000000000000000000000 --- a/reactome/src/main/java/lcsb/mapviewer/reactome/xml/columnParser/RegulationTypeColumnParser.java +++ /dev/null @@ -1,28 +0,0 @@ -package lcsb.mapviewer.reactome.xml.columnParser; - -import lcsb.mapviewer.reactome.model.ReactomeRegulationType; - -import org.w3c.dom.Node; - -/** - * Parser for properties of Reactome <a href= - * "http://www.reactome.org/cgi-bin/classbrowser?DB=gk_current&CLASS=RegulationType" - * >RegulationType</a> object. - * - * @author Piotr Gawron - * - */ -public class RegulationTypeColumnParser extends ColumnParser<ReactomeRegulationType> { - /** - * Default constructor. Defines parser for super class of RegulationType. - */ - protected RegulationTypeColumnParser() { - super(DatabaseObjectColumnParser.class); - } - - @Override - public void updateColumnFromNode(ReactomeRegulationType object, Node node) { - getParentParser().updateColumnFromNode(object, node); - } - -} diff --git a/reactome/src/main/resources/applicationContext-reactome.xml b/reactome/src/main/resources/applicationContext-reactome.xml index 12473ab089b70e17296e46ca474ced3d5541d094..a1fa4c3cc819b628bde2c33140b79462d139fc4d 100644 --- a/reactome/src/main/resources/applicationContext-reactome.xml +++ b/reactome/src/main/resources/applicationContext-reactome.xml @@ -121,7 +121,6 @@ <bean id="ReactomeReferenceMoleculeParser" class="lcsb.mapviewer.reactome.xml.ReactomeReferenceMoleculeParser"/> <bean id="ReactomeReferenceRNASequenceParser" class="lcsb.mapviewer.reactome.xml.ReactomeReferenceRNASequenceParser"/> <bean id="ReactomeReferenceSequenceParser" class="lcsb.mapviewer.reactome.xml.ReactomeReferenceSequenceParser"/> - <bean id="ReactomeRegulationTypeParser" class="lcsb.mapviewer.reactome.xml.ReactomeRegulationTypeParser"/> <bean id="ReactomeReplacedResidueParser" class="lcsb.mapviewer.reactome.xml.ReactomeReplacedResidueParser"/> <bean id="ReactomeRequirementParser" class="lcsb.mapviewer.reactome.xml.ReactomeRequirementParser"/> <bean id="ReactomeSequenceDomainParser" class="lcsb.mapviewer.reactome.xml.ReactomeSequenceDomainParser"/> diff --git a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/GeneralTests.java b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/GeneralTests.java index 8a780b394ede5c5c7bd121d3b867acaef94d8f27..24b750d1f2d6b33ef0fc448be23e2191b81d5b36 100644 --- a/reactome/src/test/java/lcsb/mapviewer/reactome/xml/GeneralTests.java +++ b/reactome/src/test/java/lcsb/mapviewer/reactome/xml/GeneralTests.java @@ -518,17 +518,6 @@ public class GeneralTests extends ReactomeTestFunctions { } } - @Test - public void testRegulationType() throws Exception { - try { - ReactomeDatabaseObject object = rc.getFullObjectForDbId(75342); - assertFalse(object.getClass().getName().contains(ReactomeDatabaseObject.class.getName())); - } catch (Exception e) { - e.printStackTrace(); - throw e; - } - } - @Test public void testSummation() throws Exception { try {