From aabd0dc84c4b2c8dc790e9730f9db2139f42b657 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Mon, 17 Dec 2018 10:33:21 +0100
Subject: [PATCH] error message is improved when problem with stoichiometry
occurs
---
.../model/celldesigner/reaction/ReactionFromXml.java | 5 ++++-
1 file changed, 4 insertions(+), 1 deletion(-)
diff --git a/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/reaction/ReactionFromXml.java b/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/reaction/ReactionFromXml.java
index e1aed802b2..8831af988b 100644
--- a/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/reaction/ReactionFromXml.java
+++ b/converter-CellDesigner/src/main/java/lcsb/mapviewer/converter/model/celldesigner/reaction/ReactionFromXml.java
@@ -215,10 +215,13 @@ public class ReactionFromXml extends XmlParser {
throw new ReactionParserException(result, e);
}
}
+ try {
assignStochiometry(result.getReactants(), reactantsNode, elements);
assignStochiometry(result.getProducts(), productsNode, elements);
assignStochiometry(result.getModifiers(), modifiersNode, elements);
-
+ } catch (InvalidStateException e) {
+ throw new ReactionParserException(result, e);
+ }
return result;
}
--
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