From b3d216aaef64e7f9d8afc0eaadb413b8fa59a262 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Mon, 24 Jul 2017 14:05:22 +0200
Subject: [PATCH] mirna parser doesn't return duplicates when searching by
target
---
.../java/lcsb/mapviewer/annotation/services/MiRNAParser.java | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/annotation/src/main/java/lcsb/mapviewer/annotation/services/MiRNAParser.java b/annotation/src/main/java/lcsb/mapviewer/annotation/services/MiRNAParser.java
index 4df17c9141..4d6f12eb9f 100644
--- a/annotation/src/main/java/lcsb/mapviewer/annotation/services/MiRNAParser.java
+++ b/annotation/src/main/java/lcsb/mapviewer/annotation/services/MiRNAParser.java
@@ -181,7 +181,7 @@ public class MiRNAParser extends CachableInterface implements IExternalService {
* @throws MiRNASearchException
* thrown when there is a problem with accessing mirna database
*/
- public List<MiRNA> getMiRnasByNames(List<String> names) throws MiRNASearchException {
+ public List<MiRNA> getMiRnasByNames(Collection<String> names) throws MiRNASearchException {
List<MiRNA> miRNAs = new ArrayList<>();
List<String> idsToRemove = new ArrayList<>();
MiRNA miRNA = null;
@@ -419,7 +419,7 @@ public class MiRNAParser extends CachableInterface implements IExternalService {
* thrown when there is a problem with accessing mirna database
*/
public List<MiRNA> getMiRnaListByTargets(Collection<MiriamData> targetsMiriam) throws MiRNASearchException {
- List<String> mirnaNames = new ArrayList<>();
+ Set<String> mirnaNames = new HashSet<>();
Set<MiriamData> targets = new HashSet<>();
for (MiriamData miriamData : targetsMiriam) {
if (!MiriamType.HGNC_SYMBOL.equals(miriamData.getDataType()) && !MiriamType.ENTREZ.equals(miriamData.getDataType())) {
--
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