diff --git a/.aspell-api-exceptions.pws b/.aspell-api-exceptions.pws index 3774ce750b814ddd68d5d042f5302fb1c7cf47c8..131319e18747962a8f6bde6b34eb8968fcbba277 100644 --- a/.aspell-api-exceptions.pws +++ b/.aspell-api-exceptions.pws @@ -1,36 +1,181 @@ personal_ws-1.1 en 0 utf-8 +aliasId annotatorClass +annotatorClassName +april +backgroundId +backgroundOverlayId +bioEntites +bioEntity +bioEntityFields +bloodBrainBarrier +boxSize +brandNames +briefView +boundaryCondition +buildDate cef +centerPoint +citationCount +className +commentId commonName +compartmentId +complexId connectedToLdap +creationDate datatable datetime +defaultOverlay defaultPrivileges +downloadImage +downloadModel +downloadProgress +downloadSource +elementAnnotations +elementClassNames +elementId +elementIds +elementTypes +excludedCompartmentIds +fileId +filteredSize +formerSymbols +fullName +functionId +functionIds +geneMapping +geneVariations +genomeId +genomeType +genomeTypes +genomeVersion +getAvailableRemoteUrls +googleLicenseConsent +grantPrivileges gui +handlerClass +hg +hierarchyVisibilityLevel HMDB +hs +idObject +imageFormats +imageLinkId +initialAmount +initialConcentration +innerPosition INTERPRO -ISOFORM inputFormat inputType isDefault +ISOFORM isPublic +isServerSide +june +kineticLaw lastActive ldapAccountAvailable +listOfAntisenseRNAs +listOfBlockDiagrams +listOfCompartmentAliases +listOfCompartments +listOfComplexSpeciesAliases +listOfGenes +listOfGroups +listOfLayers +listOfProteins +listOfRNAs +listOfSpecies +listOfSpeciesAliases +listOfUnitDefinitions +listOfUnits +localUrl +logEntries +mapCanvasType +mapCanvasTypes +mapName +mappingName +mapTypes maxColor minColor MGD +modelDisplay +modelFormats +modelId +modelLinkId +modelPoint +modelVersion +modificationDates +modificationStateTypes neutralColor +notifyEmail +objectClass objectId +objectIdentifier OMIM +organismId outputFormat +overlayContent +overlayId +overlayIds +overlayTypes +OverviewImage +OverviewImageLink +overviewImageViews +OverviewModelLink +OverviewSearchLink +participantId PDB +polygonString +positionToCompartment privilegeType +privilegeTypes +projectBackground +proteinReference +pubmedId +publicOverlay +reactionAnnotations +reactionIds +reactionTypes REFSEQ +registryIdentifier +removeReason requestResetPassword +revokePrivileges sbgn +sharedInMinervaNet simpleColor +singleLine +sizeX +sizeY +sortColumn +sortOrder +sourceUrl +speciesAlias +speciesIdentity +structuralState +submapConnections +suggestedQueryList +targetElements +targetParticipants taxonomyId termsOfUseConsent +tileSize +topOverviewImage +totalSize +transparencyLevel +uniqueId +unitDefinition +unitId +unitsId +unitTypeFactors +unitTypes updatePreferences updatePrivileges +uploadedDataLength +usualView +validConnection +valueType xxxxxxxx +zoomLevel diff --git a/.aspell.en.pws b/.aspell.en.pws index d9bbca3f356b37e20054c60f14235e43d098d57c..bb05e737d3ae6a0083d839950d3aad573cd6db56 100644 --- a/.aspell.en.pws +++ b/.aspell.en.pws @@ -124,6 +124,7 @@ DragonDB DRSC DrugBank ds +eboVir EchoBASE EcoGene EcoliWiki @@ -314,6 +315,7 @@ PATO PaxDb Pazar pdf +pdmap PDR PeptideAtlas Peroxibase @@ -360,6 +362,7 @@ pubmed px qTL QTL +QuickStart RDF reactionId reactionIdentifier @@ -445,6 +448,7 @@ txt UBERON uBio ubuntu +UCSC uid un unhandled diff --git a/web/src/test/java/lcsb/mapviewer/web/GenomicsControllerIntegrationTest.java b/web/src/test/java/lcsb/mapviewer/web/GenomicsControllerIntegrationTest.java index 9beba50afbebc2275c1e40e3015969b9aabfa8c0..41018bcc8c41378415a3018bfa03286730b7bb9e 100644 --- a/web/src/test/java/lcsb/mapviewer/web/GenomicsControllerIntegrationTest.java +++ b/web/src/test/java/lcsb/mapviewer/web/GenomicsControllerIntegrationTest.java @@ -245,7 +245,7 @@ public class GenomicsControllerIntegrationTest extends ControllerIntegrationTest genome.setType(ReferenceGenomeType.UCSC); genome.setVersion("eboVir3"); ReferenceGenomeGeneMapping mapping = new ReferenceGenomeGeneMapping(); - mapping.setName("xy"); + mapping.setName("custom-gene-mapping"); mapping.setSourceUrl("https://minerva-dev.lcsb.uni.lu/tmp/refGene.bb"); genome.addReferenceGenomeGeneMapping(mapping); @@ -356,7 +356,7 @@ public class GenomicsControllerIntegrationTest extends ControllerIntegrationTest .andDo(document("genomics/delete_genome_information", pathParameters( parameterWithName("genomeId") - .description("genome id (genomeID is retrieved as idObject described above in 6.3)")), + .description("genome id (genomeId is retrieved as idObject described above in 6.3)")), responseFields())) .andExpect(status().is2xxSuccessful()); @@ -430,9 +430,9 @@ public class GenomicsControllerIntegrationTest extends ControllerIntegrationTest .andDo(document("genomics/delete_gene_mapping", pathParameters( parameterWithName("genomeId") - .description("genome id (genomeID is retrieved as idObject described above in 6.3)"), + .description("genome id (genomeId is retrieved as idObject described above in 6.3)"), parameterWithName("geneMappingId") - .description("gene genome mapping id (geneMapping[].objectID described in 6.3)")))) + .description("gene genome mapping id (geneMapping[].objectId described in 6.3)")))) .andExpect(status().is2xxSuccessful()); }