From eb9a0cfdda8429d403761667257d6e68335f1cd3 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <piotr.gawron@uni.lu>
Date: Mon, 8 Oct 2018 10:28:26 +0200
Subject: [PATCH] rhea identifiers handled from recon
---
.../annotation/services/annotators/ElementAnnotator.java | 4 ++++
.../annotation/services/annotators/ReconAnnotator.java | 2 ++
2 files changed, 6 insertions(+)
diff --git a/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ElementAnnotator.java b/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ElementAnnotator.java
index 398ca7abb2..b2a6c81fa4 100644
--- a/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ElementAnnotator.java
+++ b/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ElementAnnotator.java
@@ -527,6 +527,10 @@ public abstract class ElementAnnotator extends CachableInterface {
MiriamData md = createMiriamData(MiriamType.CHEMBL_COMPOUND, value);
element.addMiriamData(md);
}
+ protected void addRhea(BioEntity element, String value) {
+ MiriamData md = createMiriamData(MiriamType.RHEA, value);
+ element.addMiriamData(md);
+ }
/**
* Sets {@link BioEntity#getFormula()}.
diff --git a/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ReconAnnotator.java b/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ReconAnnotator.java
index 7ab75df2d5..f86d91e59b 100644
--- a/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ReconAnnotator.java
+++ b/annotation/src/main/java/lcsb/mapviewer/annotation/services/annotators/ReconAnnotator.java
@@ -297,6 +297,8 @@ public class ReconAnnotator extends ElementAnnotator implements IExternalService
addCas(annotatedObject, value);
} else if (key.equals("chembl")) {
addChemblCompound(annotatedObject, value);
+ } else if (key.equals("rhea")) {
+ addRhea(annotatedObject, value);
} else if (key.equals("epa_id")) {
// for now we don't handle it
continue;
--
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