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  • minervaminerva
  • core
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  • #1610
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Issue created Dec 14, 2021 by Piotr Gawron@piotr.gawronOwner

add support for this identifiers

Following miriam identifiers are missing in minerva. This list is composed from warnings in minerva-service:

  • urn:miriam:mod:MOD:00048
  • urn:miriam:obo.bto:BTO:0000007
  • urn:miriam:obo.clo:CL:0000066
  • urn:miriam:sbo:SBO:0000179
  • http://identifiers.org/mamo/MAMO_0000040
  • http://identifiers.org/eco/ECO:0000212
  • http://identifiers.org/omim/139150
  • http://identifiers.org/atc/A10BB09
  • http://identifiers.org/biocyc/META:10-FORMYL-THF
  • http://identifiers.org/bto/0000782
  • http://identifiers.org/bto/BTO:0000007
  • http://identifiers.org/cco/CCO:13867
  • http://identifiers.org/cl/CL:0000000
  • http://identifiers.org/efo/0000305
  • http://identifiers.org/efo/EFO:0000616
  • http://identifiers.org/ensembl.gene/ENSG00000011485
  • http://identifiers.org/envipath/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/049709c3-768e-468f-b435-40e990942002
  • http://identifiers.org/fma/FMA:20394
  • http://identifiers.org/gdc/e1c8af06-9ea4-4062-9264-aa916e0025d1
  • http://identifiers.org/go.ref/GO:0001906
  • http://identifiers.org/hp/HP:0032322
  • http://identifiers.org/inchi/InChI=1S/C10H10N2O/c1-8-7-10(13
  • http://identifiers.org/inchi_key/AAAFZMYJJHWUPN-TXICZTDVSA-J
  • http://identifiers.org/isbn/1555810845
  • http://identifiers.org/kegg.genome/ppa
  • http://identifiers.org/metanetx.chemical/MNXM1
  • http://identifiers.org/metanetx.reaction/MNXR100018
  • http://identifiers.org/narcis/oai:cwi.nl:4725
  • http://identifiers.org/ncit/C104081
  • http://identifiers.org/obo.bto/BTO:0004911
  • http://identifiers.org/obo.psi-mod/MOD:00000
  • http://identifiers.org/omit/0006811
  • http://identifiers.org/pirsf/PIRSF005483
  • http://identifiers.org/pr/PR:000001940
  • http://identifiers.org/psimod/MOD:00000
  • http://identifiers.org/pw/PW:0000015
  • http://identifiers.org/reactome.compound/109275
  • http://identifiers.org/reactome.reaction/R-ATH-110144
  • http://identifiers.org/sabiork/100
  • http://identifiers.org/sbo/0000117
  • http://identifiers.org/sbo/degradation
  • http://identifiers.org/sbo/SBO:0000169
  • http://identifiers.org/seed.compound/cpd00001
  • http://identifiers.org/seed.reaction/rxn00001
  • http://identifiers.org/slm/000000297
  • http://identifiers.org/t3db/T3D3477
  • http://identifiers.org/tcdb/1.D.6.1.1
  • http://identifiers.org/unipathway.reaction/Q9Z1E3
  • http://identifiers.org/uniprot.genename/ADAM10
  • https://identifiers.org/inchikey/ADVPTQAUNPRNPO-REOHCLBHSA-M
  • https://identifiers.org/metabolights/MTBLC10782
  • https://identifiers.org/umbbd.compound/c0023

Weird ones, should we handle them as special cases? Or provide as urls without type recognition?

  • https://reactome.org/content/detail/R-ALL-113518
  • https://www.ebi.ac.uk/ols/ontologies/mod/terms?obo_id=MOD:00005
  • https://www.ebi.ac.uk/QuickGO/term/GO:0000139
  • https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?ligandId=10172
  • https://www.rhea-db.org/rhea/11261
  • http://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15377
  • http://www.ensembl.org/Homo_sapiens/geneview?gene=ENSG00000008405
  • http://www.ensembl.org/Homo_sapiens/transview?transcript=ENST00000317276;db=core
  • http://www.geneontology.org/GO:0006006
  • http://www.ncbi.nlm.nih.gov/pubmed/10203854
  • http://arxiv.org/pdf/1305.6449v1.pdf
  • http://hdl.handle.net/1903/11919
Edited Dec 14, 2021 by Piotr Gawron
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