global xml namespace definition causes MINERVA to fail on processing model notes
CellDesigner defines a number of namespaces locally (html, RDF etc).
When these xml definitions are moved to the header, CellDesigner still opens such a file correctly.
However, specifically for model notes, such definition:
<?xml version='1.0' encoding='UTF-8'?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:celldesigner="http://www.sbml.org/2001/ns/celldesigner" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:html="http://www.w3.org/1999/xhtml" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" level="2" version="4">
<model>
<notes><html:html><html:head><html:title /></html:head><html:body /></html:html></notes><annotation>causes MINERVA to throw an error:
107605 Other ERROR Problem with uploading map: notes cannot contain <html> tag. More details can be found in log file.. Message: notes cannot contain <html> tag
even though empty notes in the following format are accepted:
<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level2/version4" xmlns:bqmodel="http://biomodels.net/model-qualifiers/" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:celldesigner="http://www.sbml.org/2001/ns/celldesigner" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:html="http://www.w3.org/1999/xhtml" level="2" version="4">
<model metaid="CDMT00001">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title/>
</head>
<body/>
</html>
</notes>
<annotation>