wrong start and end of reaction lines

When improting from SBML there is problem with some reaction. Take a look at the attachment. Originaly reported by @david.hoksza

r1-cc_0--from--r1-cc0-tmp_order_0-tgt-ddup_False_tmp-ddup_False.xml

r1-cc_0--from--r1-cc0-tmp_order_0-tgt-ddup_False_tmp-ddup_False.svg