core merge requestshttps://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests2019-09-18T13:48:23+02:00https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/944Internal server error when parsing SBGN -> Bad request2019-09-18T13:48:23+02:00Piotr GawronInternal server error when parsing SBGN -> Bad requestv14.0.0~beta.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/966Resolve "Internal server error when parsing SBGN"2019-10-17T09:19:30+02:00Piotr GawronResolve "Internal server error when parsing SBGN"Closes #937Closes #937v14.0.3https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/995Resolve "Some modifiers not transferred from SBGN-ML"2019-11-05T13:31:46+01:00Piotr GawronResolve "Some modifiers not transferred from SBGN-ML"Closes #995Closes #995v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/996Resolve "Uppercase line break tags in SBGN export"2019-11-05T14:11:07+01:00Piotr GawronResolve "Uppercase line break tags in SBGN export"Closes #930Closes #930v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/997Resolve "Gaps in reaction lines after conversion to SBML from SBGN"2019-11-05T15:33:56+01:00Piotr GawronResolve "Gaps in reaction lines after conversion to SBML from SBGN"Closes #938Closes #938v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/998Resolve "Layout of SBGN-converted Reactome pathways is wrong"2019-11-06T10:41:09+01:00Piotr GawronResolve "Layout of SBGN-converted Reactome pathways is wrong"Closes #707Closes #707v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/999Resolve "SBGN -> SBML conversion fails"2019-11-06T12:43:37+01:00Piotr GawronResolve "SBGN -> SBML conversion fails"Closes #1006Closes #1006v14.0.4https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1010Resolve "Poor handling of modification states when exporting to SBGN-ML"2019-11-11T13:43:44+01:00Piotr GawronResolve "Poor handling of modification states when exporting to SBGN-ML"Closes #554
@david.hoksza,
I fixed the size problem of modifications. However, the position in my opinion is encoded properly and the problem is on newt.Closes #554
@david.hoksza,
I fixed the size problem of modifications. However, the position in my opinion is encoded properly and the problem is on newt.v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1011Resolve "SBGN-ML import: modified simple chemical (metabolite) glyphs"2019-11-11T15:26:23+01:00Piotr GawronResolve "SBGN-ML import: modified simple chemical (metabolite) glyphs"Closes #796Closes #796v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1012Resolve "add support for colors in sbgn parser"2019-11-12T14:49:20+01:00Piotr GawronResolve "add support for colors in sbgn parser"Closes #1009Closes #1009v15.0.0~alpha.2https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1049Resolve "don't print complex name in sbgn compliant vizualization"2020-01-29T11:02:00+01:00Piotr GawronResolve "don't print complex name in sbgn compliant vizualization"Closes #1093Closes #1093v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1050Resolve "vizualization of SBGN-like map has a problem with multimer"2020-01-29T15:41:11+01:00Piotr GawronResolve "vizualization of SBGN-like map has a problem with multimer"Closes #1091Closes #1091v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1051Resolve "Structural state should be a stadium shape in SBGN-like vizualization"2020-01-30T13:10:15+01:00Piotr GawronResolve "Structural state should be a stadium shape in SBGN-like vizualization"Closes #1095Closes #1095v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1052Resolve "allow to import/export of unit of information to SBML"2020-01-30T15:38:41+01:00Piotr GawronResolve "allow to import/export of unit of information to SBML"Closes #1088Closes #1088v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1053Resolve "Use stadium shape for SBGN-like vizualization of Simple chemicals"2020-01-30T16:30:38+01:00Piotr GawronResolve "Use stadium shape for SBGN-like vizualization of Simple chemicals"Closes #1094Closes #1094v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1056Resolve "Export to SBGN does not export some reactions"2020-02-04T09:06:32+01:00Piotr GawronResolve "Export to SBGN does not export some reactions"Closes #713Closes #713v15.0.0~beta.0https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1070problematic consumption and reversed reaction are parsed now2020-02-25T10:41:28+01:00Piotr Gawronproblematic consumption and reversed reaction are parsed nowCloses #1063Closes #1063v14.0.9https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1071Resolve "import of sbgn files"2020-02-25T14:10:37+01:00Piotr GawronResolve "import of sbgn files"Closes #1063Closes #1063v14.0.9https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1075Resolve "import of sbgn files"2020-02-27T09:46:00+01:00Piotr GawronResolve "import of sbgn files"Closes #1063Closes #1063v14.0.10https://gitlab.lcsb.uni.lu/minerva/core/-/merge_requests/1078Resolve "add more information about upload fail"2020-02-27T14:32:37+01:00Piotr GawronResolve "add more information about upload fail"Closes #1115Closes #1115v15.0.0~beta.2