From 1fd11fa320f164907421a74a1d127c41270c1774 Mon Sep 17 00:00:00 2001
From: Piotr Gawron <p.gawron@atcomp.pl>
Date: Fri, 4 Oct 2024 09:54:46 +0200
Subject: [PATCH] translate SBO terms to types
---
src/utils/bioEntity/getTypeBySBOTerm.ts | 34 ++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/src/utils/bioEntity/getTypeBySBOTerm.ts b/src/utils/bioEntity/getTypeBySBOTerm.ts
index b3d536a2..55cc4e42 100644
--- a/src/utils/bioEntity/getTypeBySBOTerm.ts
+++ b/src/utils/bioEntity/getTypeBySBOTerm.ts
@@ -1,3 +1,35 @@
export const getTypeBySBOTerm = (sbo: string | undefined): string => {
- return sbo || '';
+ switch (sbo) {
+ case 'SBO:0000334':
+ return 'Antisense RNA';
+ case 'SBO:0000253':
+ case 'SBO:0000297':
+ return 'Complex';
+ case 'SBO:0000289':
+ return 'Hypothetical Complex';
+ case 'SBO:0000291':
+ return 'Degraded';
+ case 'SBO:0000298':
+ return 'Drug';
+ case 'SBO:0000243':
+ return 'Gene';
+ case 'SBO:0000252':
+ case 'SBO:0000421':
+ case 'SBO:0000284':
+ case 'SBO:0000244':
+ return 'Protein';
+ case 'SBO:0000327':
+ return 'Ion';
+ case 'SBO:0000358':
+ return 'Phenotype';
+ case 'SBO:0000278':
+ return 'RNA';
+ case 'SBO:0000247':
+ case 'SBO:0000299':
+ return 'Simple molecule';
+ case 'SBO:0000285':
+ return 'Unknown';
+ default:
+ return '---';
+ }
};
--
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