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WIP: Checkpoint snakefile

Merged WIP: Checkpoint snakefile
checkpoint_snakefile into master
Merged Susheel Busi requested to merge checkpoint_snakefile into master
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2019_GDB/rules/ANALYSIS_RULES
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@@ -157,7 +157,7 @@ rule casc:
input:
os.path.join(RESULTS_DIR, "assembly/{assembly}.fa")
output:
os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_outputi/{assembly}.results.txt")
os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/{assembly}.results.txt")
log: os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/casc.log")
threads: config["mmseq2"]["threads"]
conda: "../envs/analysis.yaml"