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WIP: Checkpoint snakefile

Merged WIP: Checkpoint snakefile
checkpoint_snakefile into master
Merged Susheel Busi requested to merge checkpoint_snakefile into master
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2019_GDB/workflows/analysis.smk
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@@ -40,7 +40,7 @@ rule MAPPABILITY:
rule CRISPR:
input:
expand(os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_outputi/{assembly}.results.txt"), assembly=["flye", "megahit", "metaspades", "metaspades_hybrid"]),
expand(os.path.join(RESULTS_DIR, "analysis/crispr/casc/{assembly}_casc_output/{assembly}.results.txt"), assembly=["flye", "megahit", "metaspades", "metaspades_hybrid"]),
expand(os.path.join(RESULTS_DIR, "analysis/crispr/minced/{assembly}.txt"), assembly=["flye", "megahit", "metaspades", "metaspades_hybrid"])
output:
touch('crispr_analysis.done')