WIP: Checkpoint snakefile

2019_GDB/rules/ANALYSIS_RULES

@@ -185,8 +185,8 @@ rule minced:
         (date &&\
         export PATH={config[minced][PATH]} &&\
         minced {input} {output.mn1} {output.mn2} &&\
-        echo $(basename -s ".txt" {output.mn1}) >> analysis/crispr/minced/minced_CRISPR_output.txt &&\
-        grep -c 'CRISPR' {output.mn1} >> analysis/crispr/minced/minced_CRISPR_output.txt &&\
+        echo $(basename -s ".txt" {output.mn1}) >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
+        grep -c 'CRISPR' {output.mn1} >> results/analysis/crispr/minced/minced_CRISPR_output.txt &&\
         date) &> >(tee {log})
         """