delete unused files

modules_to_preload.sh

-#!/bin/bash -l 
-
-#source this file before execution of snakefile
-module load Python
-source /mnt/nfs/projects/ecosystem_biology/local_tools/IMP/bin/activate
-
-module load MEGAHIT
-module load BWA 
-module load SAMtools 
-module load BEDTools
-module load OpenBLAS 
-module load Boost/1.53.0-ictce-5.3.0 
-
-export PATH=$PATH:/mnt/nfs/projects/ecosystem_biology/local_tools/idba-1.1.1.icc/bin
-
-module load CAP3
-
-#symbolic links for prokka db 
-module load prokka
-
-export PATH=$PATH:/mnt/nfs/projects/ecosystem_biology/local_tools/tabix-0.2.6
-export PATH=$PATH:/mnt/nfs/projects/ecosystem_biology/local_tools/gkno_launcher/tools/freebayes/bin
-export PATH=$PATH:/mnt/nfs/projects/ecosystem_biology/local_tools/vcftools/bin
-export PERL5LIB=$PERL5LIB:/mnt/nfs/projects/ecosystem_biology/local_tools/vcftools/perl
-export PATH=$PATH:/mnt/nfs/projects/ecosystem_biology/local_tools/Platypus/Platypus_0.7.9.1
-
-module load R
-Rscript -e "install.packages('beanplot')"
-
-module list
-
-#The Boost C++ Libraries were successfully built!
-#
-#The following directory should be added to compiler include paths:
-#
-#    /mnt/src_nfs1/projects/ecosystem_biology/local_tools/IMP/dependencies/boost_1_54_0
-#
-#The following directory should be added to linker library paths:
-#
-#    /mnt/src_nfs1/projects/ecosystem_biology/local_tools/IMP/dependencies/boost_1_54_0/stage/lib
-#

virtualenv_setup.txt

-
-#load 3.3?
-#module load Python 
-#~/.local/bin/virtualenv-3.2 /mnt/nfs/projects/ecosystem_biology/local_tools/IMP
-source /mnt/nfs/projects/ecosystem_biology/local_tools/IMP/bin/actviate
-#pip install -U pip
-#pip install -U setuptools
-
-pip install snakemake
-pip install numpy
-easy_install scipy
-easy_install scikit-learn
-#easy_install numpy??
-#export PYTHONPATH=env/lib/python3.2/site-packages/