you failed to merge correctly so there was a typo in the file. fixed #16

rules/Util.rules

@@ -87,13 +87,8 @@ rule INDEX_SORTMERNA_DB:
             files=config["sortmerna"]["files"],
             path=DBPATH + "/sortmerna")
         ref = ':'.join('%s,%s' % (a, b) for a, b in zip(input, fastaindexed))
-<<<<<<< HEAD
-        shell("mkdir -p {params.outdir}")
-        shell("indexdb_rna --ref {ref} --fast > {log}  2>&1")
-=======
         shell("mkdir -p {DBPATH}/sortmerna")
         shell("indexdb_rna --ref {ref} > {log}  2>&1")
->>>>>>> 10e6c1581a08457563678bded44ea159d5561390
 
 
 rule DIAGRAMMS: