Clean ec2pathway output

d8c1bfaf · Shaman Narayanasamy · 9842acc4 · d8c1bfaf
Commit d8c1bfaf authored 9 years ago by Shaman Narayanasamy
--- a/rules/Util.rules
+++ b/rules/Util.rules
@@ -230,5 +230,6 @@ rule _DOWNLOAD_KEGG_INFORMATION:
    shell:
        """
        wget http://rest.kegg.jp/link/ec/pathway -O {DBPATH}/ec2pathway.txt.tmp
-        grep "path:ec" {DBPATH}/ec2pathway.txt.tmp > {DBPATH}/ec2pathway.txt
+        grep "path:ec" {DBPATH}/ec2pathway.txt.tmp | sed -e 's/path:ec//g' | sed -e 's/ec://g' > {DBPATH}/ec2pathway.txt
        """
+