Skip to content
Snippets Groups Projects
Commit fee9e6f8 authored by Shaman Narayanasamy's avatar Shaman Narayanasamy
Browse files

Changed prokka setting to include rRNA annotation

parent 20be7b1d
No related branches found
No related tags found
No related merge requests found
......@@ -27,7 +27,7 @@ rule ANALYSIS_ANNOTATE:
cd $CUR
fi
prokka --force --outdir {AN_OUT}/annotation --cpus {THREADS} --metagenome --norrna {input[0]} >> {log} 2>&1
prokka --force --outdir {AN_OUT}/annotation --cpus {THREADS} --metagenome {input[0]} >> {log} 2>&1
# Prokka gives a weird gff file with all the sequences. We need to write some small code to produce a file that
# cleans up the output
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment