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Created with Raphaël 2.2.013May10963229Apr141318Mar1716111098726Feb2524232210984227Jan29Dec211730Nov13986231Oct302927231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr282722212016141392131Mar27262524dickRemove moving of pullseq to bin directory, add pullseq to PATH variablechanges for getting phylophlan and all the rest to workMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactorAdd checkpoint to scriptchanges to get amphora2 to work, new bioperl version, commented in depschanges for amphora2fixed output for checkm rule, updated amphora2 ruleupdated checkm rule, prepare proteins skipped for nowchanged installation procedure for pullseqseparate bins rule updated for testingConflict fixAdd metaquast ruleadapted separate-bins rule and Binning workflow for testingupdated binning rule and R script so that output names matchtestadded pk + nn to outputfiles based on values in configNew binning script added, new config parameters for binning, modify binning ruleMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactorCorrect codeAdd new binning scriptChange instructionsSmall editUpdate version on IMPChanges in rulesarrange docker versionrm old step wildcardsAdd old-new file mappingsadded dependencies for amphora2,checkm, phylophlan,pullseqAdd R dependenciesCorrect rule and source scriptFix commandStill not workingfix annotaion step with named outputstart ruling binningEdit ruleMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactorEdit phylophlan ruleDEv binning first 2 stepsMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactor