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Created with Raphaël 2.2.018Jun17161583131May272625241918171310963229Apr141318Mar1716111098726Feb2524232210984227Jan29Dec211730Nov13986231Oct302927231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr28272221201614139changes for building containerAdd new RscripttasdRevertSome changeFix conflictsupdate scripts and dockerfilesChange root forlder for checkpoint libraryChange .checkpoint folderChange .checkpoint folderchange docker files layersfix prokkafix prokkaChange versionFix conflicts from mergeSet typeUpdate ruleRemove phylophlanChange data type for binningComment out phylophlanSmall fixFix IMP launcher scriptFix dockerfile conflictFix prokka rule conflictconfig conflictRead in nucmer data in MT visualize scriptException handling for empty nucmer datachange rule nameFix MG report labelsAdd checkpoint parameter, pointing to root. Perhaps not the best solutionAdd sudo for Rscriptadd sudo to prokka ruleRemove freebayes mtremove gosu unintsalling stuff we nnedMerge branch 'master' of ssh://git-r3lab-server.uni.lu:8022/IMP/IMPChange metaquast max genomes parameterame for init methodmake config and db dir before launching dockerRemove freebayes outputfix perm issues?