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Created with Raphaël 2.2.02Oct130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr282722212016141392131Mar27262524Changed prokka setting to include rRNA annotationdev_renamedev_renameR scripts saves data incrementallyRenaming of analysis stepsChanged names and streamlined rulesbug fixmigrating back assemblyadding filesrename filesadd missing filesimportting different assemblerMerge branch 'dev' into dev_megahitupdate IMP versionMegahit assembly workingCorrect MGMT assembly inputMigrate assembly to megahitFix cap3 assemblyComment out MEGAHIT assemblycap3 parametersnew command for megahitAdd latest megahit to DockerfileEdit legends and sizeDdownloading Imp from tarballsome commentsincreae imp versionfix analysis_mt_fastqc bugMerge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into devAdd exception for preprocessed fastqc analysisOutput name changeAdjustments to R scriptMerge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into devCorrectionHandle empty single end read files for fastqcFurther cleaning up of R scriptClean up R script, new plot, new functionEdit quast rule and heavy mods to R script-untesteddivide docker imageSmall change in reportarrange reportdebug dockerfiletypo