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Created with Raphaël 2.2.06Nov231Oct302927231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr282722212016141392131Mar27262524add /confmount config dirEdit samtools mpileup commandMerge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into devrm function for preprocessing. Do a different rule inclusion insteadMEGAHIT memory parameterSmall change to fix conflictSmall correctionadd config file user supplied also for init stepfix formatting issuestypotypoSet Default versionadd code to ship IMP codebase inside the containerDocument config file parametersMount the current IMP codebase via --current optionadd doc for usagerm git hash from IMP version informationChange variant call rulesadd doc for parametersadd readme + docsrm some comments + fix PEP8delete README for docker composechange CLchange path of snakemake config file and initComment out VCF merging step since it is taking too damn longMerge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into devHandle exceptions in R script; RobustificationSmall comment changeIgnore last added fileAdd instructions to upload containeradd readme to build a tarballFix bug in R plotting scriptBug fix in R readGff functionChanged prokka setting to include rRNA annotationdev_renamedev_renameR scripts saves data incrementallyRenaming of analysis stepsChanged names and streamlined rulesbug fixmigrating back assembly