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Created with Raphaël 2.2.029Oct27231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr282722212016141392131Mar27262524Document config file parametersMount the current IMP codebase via --current optionadd doc for usagerm git hash from IMP version informationChange variant call rulesadd doc for parametersadd readme + docsrm some comments + fix PEP8delete README for docker composechange CLchange path of snakemake config file and initComment out VCF merging step since it is taking too damn longMerge branch 'dev' of ssh://git-r3lab-server.uni.lu:8022/shaman.narayanasamy/IMP into devHandle exceptions in R script; RobustificationSmall comment changeIgnore last added fileAdd instructions to upload containeradd readme to build a tarballFix bug in R plotting scriptBug fix in R readGff functionChanged prokka setting to include rRNA annotationdev_renamedev_renameR scripts saves data incrementallyRenaming of analysis stepsChanged names and streamlined rulesbug fixmigrating back assemblyadding filesrename filesadd missing filesimportting different assemblerMerge branch 'dev' into dev_megahitupdate IMP versionMegahit assembly workingCorrect MGMT assembly inputMigrate assembly to megahitFix cap3 assemblyComment out MEGAHIT assemblycap3 parametersnew command for megahitAdd latest megahit to Dockerfile