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Created with Raphaël 2.2.025May241918171310963229Apr141318Mar1716111098726Feb2524232210984227Jan29Dec211730Nov13986231Oct302927231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr282722212016141392131Mar27262524missing columnAdd name to the docker containercommand line parameter refactoringAdd a way to specify container name, and auto-kill it if there is CrtlCNew config parameter for metaquastChange trimmomatic parameterMerge branch 'master' of ssh://git-r3lab-server.uni.lu:8022/IMP/IMPchange url of static filesRemove freebayes from rulestry direct shell commandtypouse bzip2.openuse chunk sizetry one shot decompressionEOFError must be cached when unbzippingadd CHUNK SIZEcomment old workflow filescomment old workflow filesfix input directoryChange pathchange repository url in DockerfileChanged versions to 1.3rebuilt container for testing binning analysisFix conflictSmall changeUpdate bin-analysis.amphora.rule -> changed amphora2_homeEdit amphora rulePreliminary code in amphora2 scriptAdd prepare protein ruleSeparate bins into foldersSmall changesMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactordickRemove moving of pullseq to bin directory, add pullseq to PATH variablechanges for getting phylophlan and all the rest to workMerge branch 'binning_refactor' of ssh://git-r3lab-server.uni.lu:8022/IMP-dev/IMP into binning_refactorAdd checkpoint to scriptchanges to get amphora2 to work, new bioperl version, commented in depschanges for amphora2fixed output for checkm rule, updated amphora2 rule