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Created with Raphaël 2.2.022Jun20191817161583131May272625241918171310963229Apr141318Mar1716111098726Feb2524232210984227Jan29Dec211730Nov13986231Oct302927231413109872130Sep29282511982130Aug29282726252420191728Jul2521201716151311109876312Jun2128May530Apr2827222120161413Adjust binning scriptRemove usearch binaryFix scripts and rulesSome changeCorrectionsCorrect commandweird mergehmmchanges for building containerAdd new RscripttasdRevertSome changeFix conflictsupdate scripts and dockerfilesChange root forlder for checkpoint libraryChange .checkpoint folderChange .checkpoint folderchange docker files layersfix prokkafix prokkaChange versionFix conflicts from mergeSet typeUpdate ruleRemove phylophlanChange data type for binningComment out phylophlanSmall fixFix IMP launcher scriptFix dockerfile conflictFix prokka rule conflictconfig conflictRead in nucmer data in MT visualize scriptException handling for empty nucmer datachange rule nameFix MG report labelsAdd checkpoint parameter, pointing to root. Perhaps not the best solutionAdd sudo for Rscriptadd sudo to prokka rule