Installation: downloading required databases
Add scripts and rules to download and setup the required databases.
Q: main workflow or sub-workflow?
-
trimmomatic
adapters -
sortmerna
's rRNA gene sequences -
reference genome for PhiX -
HMMs for annotation ( mantis
) -
kraken2
database(s) -
GTDBtk data -
mantis
databases setup
Include scripts provided by @pedro.queiros: IMP_autodl.tar.xz
Edited by Valentina Galata